Strain identifier

BacDive ID: 72

Type strain: Yes

Species: Roseomonas aquatica

Strain Designation: TR53

Strain history: CIP <- 2006, CECT <- A. Ventosa: strain TR53

NCBI tax ID(s): 373043 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 8017

BacDive-ID: 72

DSM-Number: 19438

keywords: 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, colony-forming

description: Roseomonas aquatica TR53 is an obligate aerobe, mesophilic, Gram-negative bacterium that forms irregular colonies and was isolated from drinking water distribution system of Seville.

NCBI tax id

  • NCBI tax id: 373043
  • Matching level: species

strain history

@refhistory
8017<- JCM/RIKEN <- A. Ventosa, Univ. Seville, Dept. Microbiol. Parasitol., Spain; TR53
67770A. Ventosa TR53.
116433CIP <- 2006, CECT <- A. Ventosa: strain TR53

doi: 10.13145/bacdive72.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Roseomonas
  • species: Roseomonas aquatica
  • full scientific name: Roseomonas aquatica Gallego et al. 2006
  • synonyms

    • @ref: 20215
    • synonym: Paeniroseomonas aquatica

@ref: 8017

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Roseomonas

species: Roseomonas aquatica

full scientific name: Roseomonas aquatica Gallego et al. 2006 emend. Sánchez-Porro et al. 2009

strain designation: TR53

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthmotilitycell shape
22959negative1.2-2.0 µm1.0 µmno
116433negativenooval-shaped

colony morphology

@refcolony sizecolony colorcolony shapeincubation periodmedium used
229590.5-1.0 mmpale-pink-pigmentedirregular4 daysR2A Agar
22959<0.5 mmnutrient agar medium

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8017R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
22959nutrient agar mediumyes
22959Reasoner's 2A agar (R2A)yes
37542MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromatiyesDistilled water make up to (1000.000 ml);R2A agar (18.200 g)
116433CIP Medium 566yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=566

culture temp

@refgrowthtypetemperaturerange
8017positivegrowth28mesophilic
22959positivegrowth15.0-35.0
22959positiveoptimum25.0-28.0mesophilic
37542positivegrowth30mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
22959positivegrowth5.0-9.0alkaliphile
22959positiveoptimum7.0

Physiology and metabolism

oxygen tolerance

  • @ref: 22959
  • oxygen tolerance: obligate aerobe

spore formation

  • @ref: 22959
  • spore formation: no

halophily

  • @ref: 22959
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: >2.0 %

observation

  • @ref: 67770
  • observation: quinones: Q-10

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2295915824D-fructose-builds acid from
2295912936D-galactose-builds acid from
2295917634D-glucose-builds acid from
2295917306maltose-builds acid from
2295916899D-mannitol-builds acid from
2295916024D-mannose-builds acid from
2295916551D-trehalose-builds acid from
2295965327D-xylose-builds acid from
2295917754glycerol-builds acid from
2295917716lactose-builds acid from
2295953258citric acid-carbon source
22959168082-dehydro-D-gluconate-carbon source
22959174265-dehydro-D-gluconate-carbon source
2295917128adipate-carbon source
2295927613amygdalin-carbon source
2295918305arbutin-carbon source
2295927689decanoate-carbon source
2295915963ribitol-carbon source
2295917108D-arabinose-carbon source
2295918333D-arabitol-carbon source
2295917057cellobiose-carbon source
2295915824D-fructose-carbon source
2295928847D-fucose-carbon source
2295912936D-galactose-carbon source
2295917634D-glucose-carbon source
2295917716lactose-carbon source
2295962318D-lyxose-carbon source
2295917306maltose-carbon source
2295916899D-mannitol-carbon source
2295916024D-mannose-carbon source
229596731melezitose-carbon source
2295928053melibiose-carbon source
2295916634raffinose-carbon source
2295916988D-ribose-carbon source
2295917924D-sorbitol-carbon source
2295916443D-tagatose-carbon source
2295916551D-trehalose-carbon source
2295932528turanose-carbon source
2295965327D-xylose-carbon source
2295916813galactitol-carbon source
2295917113erythritol-carbon source
229594853esculin-carbon source
2295928066gentiobiose-carbon source
2295917754glycerol-carbon source
2295928087glycogen-carbon source
2295917268myo-inositol-carbon source
2295915443inulin-carbon source
2295930849L-arabinose-carbon source
2295918287L-fucose-carbon source
2295918403L-arabitol-carbon source
2295962345L-rhamnose-carbon source
2295917266L-sorbose-carbon source
2295965328L-xylose-carbon source
2295925115malate-carbon source
22959320061methyl alpha-D-glucopyranoside-carbon source
2295943943methyl alpha-D-mannoside-carbon source
2295974863methyl beta-D-xylopyranoside-carbon source
22959506227N-acetylglucosamine-carbon source
2295918401phenylacetate-carbon source
2295932032potassium gluconate-carbon source
2295917814salicin-carbon source
2295953258sodium citrate-carbon source
2295928017starch-carbon source
2295917992sucrose-carbon source
2295917151xylitol-carbon source
2295927897tryptophan-energy source
2295917234glucose-fermentation
22959casein-hydrolysis
2295916991dna-hydrolysis
229595291gelatin-hydrolysis
2295928017starch-hydrolysis
2295953426tween 80-hydrolysis
2295917632nitrate+reduction
11643317632nitrate+reduction
11643316301nitrite-reduction

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantresistance conc.
2295928669bacitracinyesyes10 Unit
2295917334penicillinyesyes10 Unit
229597507neomycinyesyes10 µg (disc)
2295917076streptomycinyesyes10 µg (disc)
2295948923erythromycinyesyes15 µg (disc)
229593542cephalothinyesyes30 µg (disc)
2295917698chloramphenicolyesyes30 µg (disc)
229596104kanamycinyesyes30 µg (disc)
22959100147nalidixic acidyesyes30 µg (disc)
2295928368novobiocinyesyes30 µg (disc)
2295928077rifampicinyesyes30 µg (disc)
2295927902tetracyclineyesyes30 µg (disc)
2295928001vancomycinyesyes30 µg (disc)

metabolite production

@refChebi-IDmetaboliteproduction
2295935581indoleno
2295916136hydrogen sulfideno
2295915688acetoinno
11643335581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-testindole testcitrate test
2295915688acetoin-
2295917234glucose-
2295935581indole-
2295916947citrate-

enzymes

@refvalueactivityec
22959acid phosphatase+3.1.3.2
22959alkaline phosphatase+3.1.3.1
22959alpha-chymotrypsin-3.4.21.1
22959alpha-fucosidase-3.2.1.51
22959alpha-galactosidase-3.2.1.22
22959alpha-glucosidase-3.2.1.20
22959alpha-mannosidase-3.2.1.24
22959arginine dihydrolase-3.5.3.6
22959beta-galactosidase-3.2.1.23
22959beta-glucosidase-3.2.1.21
22959beta-glucuronidase-3.2.1.31
22959catalase+1.11.1.6
22959cystine arylamidase-3.4.11.3
22959cytochrome oxidase-1.9.3.1
22959esterase (C 4)+
22959esterase lipase (C 8)+
22959leucine arylamidase+3.4.11.1
22959lipase (C 14)-
22959N-acetyl-beta-glucosaminidase-3.2.1.52
22959naphthol-AS-BI-phosphohydrolase+
22959trypsin-3.4.21.4
22959tryptophan deaminase-4.1.99.1
22959urease+3.5.1.5
22959valine arylamidase-
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
116433oxidase-
116433catalase+1.11.1.6
116433urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116433-+++-+----++--------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic locationlatitudelongitudeenrichment cultureenrichment culture durationenrichment culture temperature
8017drinking water distribution system of SevilleSpainESPEurope
22959potable waterSpainESPEuropeSeville37.3925-5.9925plate count agar and R2A7 days28.0
67770Drinking water distribution system of SevilleSpainESPEurope
116433Environment, Drinking waterSpainESPEuropeSevilla

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Freshwater

taxonmaps

  • @ref: 69479
  • File name: preview.99_9162.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_266;96_4375;97_5327;98_6734;99_9162&stattab=map
  • Last taxonomy: Roseomonas aquatica subclade
  • 16S sequence: AM231587
  • Sequence Identity:
  • Total samples: 3865
  • soil counts: 1130
  • aquatic counts: 761
  • animal counts: 1125
  • plant counts: 849

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
80171Risk group (German classification)
1164331Risk group (French classification)

Sequence information

16S sequences

  • @ref: 8017
  • description: Roseomonas aquatica partial 16S rRNA gene, type strain TR53T
  • accession: AM231587
  • length: 1387
  • database: ena
  • NCBI tax ID: 373043

GC content

  • @ref: 8017
  • GC-content: 68.6
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 8017

culture collection no.: DSM 19438, CECT 7131, JCM 13556, CCM 7358, NCIMB 14503, CIP 109393

straininfo link

  • @ref: 69756
  • straininfo: 297309

literature

  • topic: Phylogeny
  • Pubmed-ID: 17012549
  • title: Roseomonas aquatica sp. nov., isolated from drinking water.
  • authors: Gallego V, Sanchez-Porro C, Garcia MT, Ventosa A
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.64379-0
  • year: 2006
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fresh Water/*microbiology, Genes, rRNA, Methylobacteriaceae/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spain, *Water Supply
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8017Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19438)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19438
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
22959Virginia Gallego,Cristina Sánchez-Porro,Maria Teresa García,Antonio Ventosa10.1099/ijs.0.64379-0Roseomonas aquatica sp. nov., isolated from drinking waterIJSEM 56: 2291-2295 200617012549
37542Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7130
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69756Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID297309.1StrainInfo: A central database for resolving microbial strain identifiers
116433Curators of the CIPCollection of Institut Pasteur (CIP 109393)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109393