Strain identifier
BacDive ID: 7182
Type strain: 
Species: Methylobacterium aerolatum
Strain Designation: 5413S-11
Strain history: KACC 11766 <-- H.-Y. Weon 5413S-11.
NCBI tax ID(s): 418708 (species)
version 8.1 (current version)
General
@ref: 7831
BacDive-ID: 7182
DSM-Number: 19013
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Methylobacterium aerolatum 5413S-11 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from air sample.
NCBI tax id
- NCBI tax id: 418708
- Matching level: species
strain history
| @ref | history |
|---|---|
| 7831 | <- S.-W. Kwon, KACC; 5413S-11 |
| 67770 | KACC 11766 <-- H.-Y. Weon 5413S-11. |
doi: 10.13145/bacdive7182.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Methylobacteriaceae
- genus: Methylobacterium
- species: Methylobacterium aerolatum
- full scientific name: Methylobacterium aerolatum Weon et al. 2008
@ref: 7831
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Methylobacteriaceae
genus: Methylobacterium
species: Methylobacterium aerolatum
full scientific name: Methylobacterium aerolatum Weon et al. 2008
strain designation: 5413S-11
type strain: yes
Morphology
cell morphology
- @ref: 32155
- gram stain: negative
- cell length: 2.25 µm
- cell width: 1 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 32155
- production: yes
Culture and growth conditions
culture medium
- @ref: 7831
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 7831 | positive | growth | 30 | mesophilic |
| 32155 | positive | growth | 10-35 | |
| 32155 | positive | optimum | 28 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 32155 | positive | growth | 05-09 | alkaliphile |
| 32155 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 32155
- oxygen tolerance: aerobe
halophily
- @ref: 32155
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: <2 %
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 32155 | 15740 | formate | + | carbon source |
| 32155 | 17754 | glycerol | + | carbon source |
| 32155 | 24996 | lactate | + | carbon source |
| 32155 | 51850 | methyl pyruvate | + | carbon source |
| 32155 | 30031 | succinate | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 32155 | catalase | + | 1.11.1.6 |
| 32155 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 7831 | air sample | Suwon city | Republic of Korea | KOR | Asia |
| 67770 | Air sample in Suwon City | Republic of Korea | KOR | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Air
taxonmaps
- @ref: 69479
- File name: preview.99_18275.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15368;96_285;97_11230;98_13804;99_18275&stattab=map
- Last taxonomy: Methylobacterium
- 16S sequence: EF174498
- Sequence Identity:
- Total samples: 218
- soil counts: 30
- aquatic counts: 31
- animal counts: 129
- plant counts: 28
Safety information
risk assessment
- @ref: 7831
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7831
- description: Methylobacterium aerolatum strain 5413S-11 16S ribosomal RNA gene, partial sequence
- accession: EF174498
- length: 1332
- database: ena
- NCBI tax ID: 418708
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Methylobacterium aerolatum DSM 19013 | 2928195108 | draft | img | 418708 |
| 66792 | Methylobacterium aerolatum DSM 19013 | GCA_022179085 | contig | ncbi | 418708 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 7831 | 73.2 | |
| 67770 | 73.2 | high performance liquid chromatography (HPLC) |
External links
@ref: 7831
culture collection no.: DSM 19013, KACC 11766, JCM 16406
straininfo link
- @ref: 76635
- straininfo: 401352
literature
- topic: Phylogeny
- Pubmed-ID: 18175690
- title: Methylobacterium iners sp. nov. and Methylobacterium aerolatum sp. nov., isolated from air samples in Korea.
- authors: Weon HY, Kim BY, Joa JH, Son JA, Song MH, Kwon SW, Go SJ, Yoon SH
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.65047-0
- year: 2008
- mesh: *Air Microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, Fatty Acids/analysis, Genes, rRNA, Korea, Methylobacterium/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 7831 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19013) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19013 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 32155 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28398 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 76635 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID401352.1 | StrainInfo: A central database for resolving microbial strain identifiers |