Strain identifier
BacDive ID: 7174
Type strain: 
Species: Methylorubrum podarium
Strain Designation: FM4
Strain history: <- A. P. Wood; FM4
NCBI tax ID(s): 200476 (species)
version 8.1 (current version)
General
@ref: 5700
BacDive-ID: 7174
DSM-Number: 15083
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic
description: Methylorubrum podarium FM4 is an aerobe, mesophilic bacterium that was isolated from human foot.
NCBI tax id
- NCBI tax id: 200476
- Matching level: species
strain history
- @ref: 5700
- history: <- A. P. Wood; FM4
doi: 10.13145/bacdive7174.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Methylobacteriaceae
- genus: Methylorubrum
- species: Methylorubrum podarium
- full scientific name: Methylorubrum podarium (Anesti et al. 2006) Green and Ardley 2018
synonyms
- @ref: 20215
- synonym: Methylobacterium podarium
@ref: 5700
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Methylobacteriaceae
genus: Methylorubrum
species: Methylorubrum podarium
full scientific name: Methylorubrum podarium (Anesti et al. 2006) Green and Ardley 2018
strain designation: FM4
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 5700 | R2A MEDIUM (DSMZ Medium 830) | yes | https://mediadive.dsmz.de/medium/830 | Name: R2A MEDIUM (DSMZ Medium 830; with strain-specific modifications) Composition: Agar 15.0 g/l Methanol 10.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l Na-pyruvate 0.3 g/l K2HPO4 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
| 5700 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
culture temp
- @ref: 5700
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 5700
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
- @ref: 5700
- sample type: human foot
- geographic location: London
- country: United Kingdom
- origin.country: GBR
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body-Site | #Limb | #Foot |
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Methylobacterium podarium gene for 16S rRNA, partial sequence, strain: DSM 15083 | AB302930 | 1435 | ena | 200476 |
| 20218 | Methylobacterium podarium 16S ribosomal RNA gene, partial sequence | AF514774 | 1367 | ena | 200476 |
Genome sequences
- @ref: 66792
- description: Methylorubrum podarium DSM 15083
- accession: GCA_022179745
- assembly level: contig
- database: ncbi
- NCBI tax ID: 200476
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 78.047 | no |
| gram-positive | no | 97.446 | no |
| anaerobic | no | 97.879 | no |
| aerobic | yes | 90.597 | no |
| halophile | no | 93.967 | no |
| spore-forming | no | 91.001 | no |
| motile | yes | 82.677 | no |
| glucose-ferment | no | 89.724 | no |
| thermophile | no | 99.105 | no |
| glucose-util | yes | 89.1 | no |
External links
@ref: 5700
culture collection no.: DSM 15083, ATCC BAA 547
straininfo link
- @ref: 76627
- straininfo: 297262
literature
- topic: Phylogeny
- Pubmed-ID: 30024371
- title: Review of the genus Methylobacterium and closely related organisms: a proposal that some Methylobacterium species be reclassified into a new genus, Methylorubrum gen. nov.
- authors: Green PN, Ardley JK
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.002856
- year: 2018
- mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, Methylobacterium/*classification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Transcriptome
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 5700 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15083) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15083 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 76627 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297262.1 | StrainInfo: A central database for resolving microbial strain identifiers |