Strain identifier

BacDive ID: 7151

Type strain: Yes

Species: Methylobacterium organophilum

Strain Designation: XX

Strain history: CIP <- 1984, NCIB <- ATCC <- R.S. Hanson: strain XX

NCBI tax ID(s): 410 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 7410

BacDive-ID: 7151

DSM-Number: 18172

keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped

description: Methylobacterium organophilum XX is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from sediment.

NCBI tax id

  • NCBI tax id: 410
  • Matching level: species

strain history

@refhistory
7410<- NCIMB <- ATCC <- R. S. Hanson. NOt identical to DSM 760, a strain directly obtained from the laboratory where the strain was isolated
121432CIP <- 1984, NCIB <- ATCC <- R.S. Hanson: strain XX

doi: 10.13145/bacdive7151.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Methylobacteriaceae
  • genus: Methylobacterium
  • species: Methylobacterium organophilum
  • full scientific name: Methylobacterium organophilum Patt et al. 1976 (Approved Lists 1980)

@ref: 7410

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Methylobacteriaceae

genus: Methylobacterium

species: Methylobacterium organophilum

full scientific name: Methylobacterium organophilum Patt et al. 1976

strain designation: XX

type strain: yes

Morphology

cell morphology

  • @ref: 121432
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7410METHYLOBACTERIUM MEDIUM (DSMZ Medium 125)yeshttps://mediadive.dsmz.de/medium/125Name: METHYLOBACTERIUM MEDIUM (DSMZ Medium 125) Composition: Agar 12.0 g/l KNO3 1.0 g/l Na2HPO4 0.23 g/l MgSO4 x 7 H2O 0.2 g/l NaH2PO4 0.07 g/l CaCl2 x 2 H2O 0.02 g/l FeSO4 x 7 H2O 0.001 g/l ZnSO4 x 7 H2O 7e-05 g/l H3BO3 1e-05 g/l MnSO4 x 5 H2O 1e-05 g/l MoO3 1e-05 g/l CuSO4 x 5 H2O 5e-06 g/l Distilled water
7410NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1; with strain-specific modifications) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Methanol Distilled water

culture temp

  • @ref: 7410
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
7410sedimentWisconsin, Madison, Lake MendotaUSAUSANorth America
121432Environment, SedimentMendota lake, MadisonUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Sediment
#Environmental#Terrestrial#Sediment

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
74101Risk group (German classification)
1214321Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Methylobacterium organophilum 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequenceAF3381811163ena410
20218Methylobacterium organophilum partial 16S rRNA gene, strain JCM 2833AJ400920697ena410
7410Methylobacterium organophilum partial 16S rRNA gene, type strain DSM 18172TLN6815621435ena410

GC content

  • @ref: 7410
  • GC-content: 66.0

External links

@ref: 7410

culture collection no.: DSM 18172, ATCC 27886, CIP 101049, IFO 15689, JCM 2833, NCIMB 11278, DSM 760, LMG 6083

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny13130002Bosea minatitlanensis sp. nov., a strictly aerobic bacterium isolated from an anaerobic digester.Ouattara AS, Assih EA, Thierry S, Cayol JL, Labat M, Monroy O, Macarie HInt J Syst Evol Microbiol10.1099/ijs.0.02540-02003Aerobiosis, Bradyrhizobiaceae/classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Genes, Bacterial, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sewage/microbiology, Species SpecificityGenetics
Phylogeny17329786Methylobacterium jeotgali sp. nov., a non-pigmented, facultatively methylotrophic bacterium isolated from jeotgal, a traditional Korean fermented seafood.Aslam Z, Lee CS, Kim KH, Im WT, Ten LN, Lee STInt J Syst Evol Microbiol10.1099/ijs.0.64625-02007DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fermentation, Korea, Methylobacterium/*classification/genetics/isolation & purification/physiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seafood/*microbiologyGenetics
Phylogeny22199216Methylobacterium gnaphalii sp. nov., isolated from leaves of Gnaphalium spicatum.Tani A, Sahin N, Kimbara KInt J Syst Evol Microbiol10.1099/ijs.0.037713-02011Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Gnaphalium/*microbiology, Methylobacterium/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Plant Leaves/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Ubiquinone/analysisGenetics
Phylogeny23291886Methylobacterium trifolii sp. nov. and Methylobacterium thuringiense sp. nov., methanol-utilizing, pink-pigmented bacteria isolated from leaf surfaces.Wellner S, Lodders N, Glaeser SP, Kampfer PInt J Syst Evol Microbiol10.1099/ijs.0.047787-02013Bacterial Typing Techniques, Caryophyllaceae/*microbiology, DNA, Bacterial/genetics, Fatty Acids/analysis, Germany, Methanol/*metabolism, Methylobacterium/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, *Pigmentation, Plant Leaves/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Trifolium/*microbiologyGenetics
Phylogeny23475343Methylobacterium haplocladii sp. nov. and Methylobacterium brachythecii sp. nov., isolated from bryophytes.Tani A, Sahin NInt J Syst Evol Microbiol10.1099/ijs.0.048215-02013Bacterial Typing Techniques, Base Composition, Bryophyta/*microbiology, DNA, Bacterial/genetics, Fatty Acids/analysis, Japan, Methylobacterium/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Ubiquinone/analogs & derivatives/analysisGenetics
Phylogeny24556636Psychroglaciecola arctica gen. nov., sp. nov., isolated from Arctic glacial foreland soil.Qu Z, Jiang F, Chang X, Qiu X, Ren L, Fang C, Peng FInt J Syst Evol Microbiol10.1099/ijs.0.060913-02014Arctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Methylobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Svalbard, Ubiquinone/chemistryGenetics
Phylogeny31463788Methylobacterium terrae sp. nov., a radiation-resistant bacterium isolated from gamma ray-irradiated soil.Kim J, Chhetri G, Kim I, Kim H, Kim MK, Seo TJ Microbiol10.1007/s12275-019-9007-92019Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Gamma Rays, Genotype, Lipids/chemistry, Methylobacterium/*classification/genetics/*isolation & purification/radiation effects, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Radiation Tolerance, Republic of Korea, Sequence Analysis, DNA, Soil, *Soil Microbiology, Ubiquinone/analogs & derivatives/chemistry, Whole Genome SequencingGenetics
Phylogeny32100693Methylobacterium terricola sp. nov., a gamma radiation-resistant bacterium isolated from gamma ray-irradiated soil.Kim J, Chhetri G, Kim I, Lee B, Jang W, Kim MK, Seo TInt J Syst Evol Microbiol10.1099/ijsem.0.0040542020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Gamma Rays, Methylobacterium/*classification/isolation & purification/radiation effects, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7410Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18172)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18172
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
121432Curators of the CIPCollection of Institut Pasteur (CIP 101049)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20101049