Strain identifier

BacDive ID: 7080

Type strain: Yes

Species: Methanolobus bombayensis

Strain history: <- D.R. Ranade, MCM B706 <- P.C. Kadam, B-1

NCBI tax ID(s): 38023 (species)

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General

@ref: 2892

BacDive-ID: 7080

DSM-Number: 7082

keywords: genome sequence, 16S sequence, Archaea, anaerobe, mesophilic

description: Methanolobus bombayensis DSM 7082 is an anaerobe, mesophilic archaeon that was isolated from sea sediment.

NCBI tax id

  • NCBI tax id: 38023
  • Matching level: species

strain history

  • @ref: 2892
  • history: <- D.R. Ranade, MCM B706 <- P.C. Kadam, B-1

doi: 10.13145/bacdive7080.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Methanomicrobia
  • order: Methanosarcinales
  • family: Methanosarcinaceae
  • genus: Methanolobus
  • species: Methanolobus bombayensis
  • full scientific name: Methanolobus bombayensis Kadam et al. 1994

@ref: 2892

domain: Archaea

phylum: Euryarchaeota

class: Methanomicrobia

order: Methanosarcinales

family: Methanosarcinaceae

genus: Methanolobus

species: Methanolobus bombayensis

full scientific name: Methanolobus bombayensis Kadam et al. 1994

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 2892
  • name: METHANOCOCCOIDES MEDIUM (DSMZ Medium 141c)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/141c
  • composition: Name: METHANOCOCCOIDES MEDIUM (DSMZ Medium 141c) Composition: NaHCO3 4.89237 g/l Trimethylammonium chloride 4.89237 g/l MgCl2 x 6 H2O 3.91389 g/l Yeast extract 1.95695 g/l Trypticase peptone 1.95695 g/l Na-acetate 0.978474 g/l Na2S x 9 H2O 0.489237 g/l L-Cysteine HCl x H2O 0.489237 g/l KCl 0.332681 g/l NH4Cl 0.244618 g/l K2HPO4 0.136986 g/l MgSO4 x 7 H2O 0.0293542 g/l Nitrilotriacetic acid 0.0146771 g/l NaCl 0.00978474 g/l MnSO4 x H2O 0.00489237 g/l Fe(NH4)2(SO4)2 x 6 H2O 0.00195695 g/l CoSO4 x 7 H2O 0.00176125 g/l ZnSO4 x 7 H2O 0.00176125 g/l CaCl2 x 2 H2O 0.000978474 g/l FeSO4 x 7 H2O 0.000978474 g/l Sodium resazurin 0.000489237 g/l NiCl2 x 6 H2O 0.000293542 g/l AlK(SO4)2 x 12 H2O 0.000195695 g/l CuSO4 x 5 H2O 9.78474e-05 g/l Pyridoxine hydrochloride 9.78474e-05 g/l H3BO3 9.78474e-05 g/l Na2MoO4 x 2 H2O 9.78474e-05 g/l (DL)-alpha-Lipoic acid 4.89237e-05 g/l Thiamine HCl 4.89237e-05 g/l Riboflavin 4.89237e-05 g/l Nicotinic acid 4.89237e-05 g/l Calcium D-(+)-pantothenate 4.89237e-05 g/l p-Aminobenzoic acid 4.89237e-05 g/l Biotin 1.95695e-05 g/l Folic acid 1.95695e-05 g/l Na2WO4 x 2 H2O 3.91389e-06 g/l Na2SeO3 x 5 H2O 2.93542e-06 g/l Vitamin B12 9.78474e-07 g/l Distilled water

culture temp

  • @ref: 2892
  • growth: positive
  • type: growth
  • temperature: 35
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 2892
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 2892
  • sample type: sea sediment
  • geographic location: Arabian Sea near Bombay
  • country: India
  • origin.country: IND
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_194302.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17802;96_68784;97_89426;98_121695;99_194302&stattab=map
  • Last taxonomy: Methanolobus bombayensis
  • 16S sequence: FR733684
  • Sequence Identity:
  • Total samples: 38
  • soil counts: 2
  • aquatic counts: 36

Safety information

risk assessment

  • @ref: 2892
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 2892
  • description: Methanolobus bombayensis partial 16S rRNA gene, type strain DSM7082T
  • accession: FR733684
  • length: 1469
  • database: ena
  • NCBI tax ID: 38023

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Methanolobus bombayensis DSM 7082GCA_017873415contigncbi38023
66792Methanolobus bombayensis DSM 70822913348608draftimg38023

External links

@ref: 2892

culture collection no.: DSM 7082, MCM B706

straininfo link

  • @ref: 76536
  • straininfo: 48361

Reference

@idauthorscataloguedoi/urltitle
2892Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7082)https://www.dsmz.de/collection/catalogue/details/culture/DSM-7082
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76536Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID48361.1StrainInfo: A central database for resolving microbial strain identifiers