Strain identifier
BacDive ID: 7048
Type strain: 
Species: Methanothrix thermoacetophila
Strain Designation: CALS-1
Strain history: <- S. H. Zinder, Cornell University, Ithaca, NY, USA; CALS-1
NCBI tax ID(s): 2224 (species)
version 8.1 (current version)
General
@ref: 1490
BacDive-ID: 7048
DSM-Number: 3870
keywords: 16S sequence, Archaea, anaerobe
description: Methanothrix thermoacetophila CALS-1 is an anaerobe archaeon that was isolated from thermophilic anaerobic bioreactor.
NCBI tax id
- NCBI tax id: 2224
- Matching level: species
strain history
- @ref: 1490
- history: <- S. H. Zinder, Cornell University, Ithaca, NY, USA; CALS-1
doi: 10.13145/bacdive7048.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Methanomicrobia
- order: Methanosarcinales
- family: Methanotrichaceae
- genus: Methanothrix
- species: Methanothrix thermoacetophila
- full scientific name: Methanothrix thermoacetophila corrig. Nozhevnikova and Chudina 1988
synonyms
@ref synonym 20215 Methanothrix thermophila 20215 Methanosaeta thermophila 20215 Methanothrix thermoacetophilia 20215 Methanosaeta thermoacetophila
@ref: 1490
domain: Archaea
phylum: Euryarchaeota
class: Methanomicrobia
order: Methanosarcinales
family: Methanosaetaceae
genus: Methanothrix
species: Methanothrix thermoacetophila
full scientific name: Methanosaeta thermophila (Kamagata et al. 1992) Boone and Kamagata 1998
strain designation: CALS-1
type strain: no
Morphology
colony morphology
- @ref: 1490
- incubation period: 3-7 days
Physiology and metabolism
oxygen tolerance
- @ref: 1490
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 1490
- sample type: thermophilic anaerobic bioreactor
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Engineered | #Bioreactor |
| #Condition | #Anoxic (anaerobic) |
| #Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 1490
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Methanothrix thermophila 16S ribosomal RNA gene, partial sequence | M59141 | 1422 | ena | 2224 |
| 20218 | 16S rRNA [Methanothrix sp., CALS-1, DSM 3870, rRNA Partial, 159 nt, segment 1 of 3] | S42714 | 159 | ena | 2222 |
| 20218 | 16S rRNA [Methanothrix sp., CALS-1, DSM 3870, rRNA Partial, 194 nt, segment 2 of 3] | S42715 | 194 | ena | 2222 |
| 20218 | 16S rRNA [Methanothrix sp., CALS-1, DSM 3870, rRNA Partial, 186 nt, segment 3 of 3] | S42716 | 186 | ena | 2222 |
| 1490 | Methanosaeta thermophila strain CALS-1 16S ribosomal RNA, partial sequence | AH003995 | 739 | ena | 2224 |
External links
@ref: 1490
culture collection no.: DSM 3870
straininfo link
- @ref: 76507
- straininfo: 47769
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 1380291 | Characterization of three thermophilic strains of Methanothrix ("Methanosaeta") thermophila sp. nov. and rejection of Methanothrix ("Methanosaeta") thermoacetophila. | Kamagata Y, Kawasaki H, Oyaizu H, Nakamura K, Mikami E, Endo G, Koga Y, Yamasato K | Int J Syst Bacteriol | 10.1099/00207713-42-3-463 | 1992 | Bacterial Proteins/chemistry, Base Composition, Base Sequence, DNA, Bacterial/chemistry, Electrophoresis, Polyacrylamide Gel, Methanosarcinaceae/*classification/cytology/physiology, Molecular Sequence Data, RNA, Bacterial/chemistry, RNA, Ribosomal, 16S/chemistry, Sequence Homology, Nucleic Acid, Terminology as Topic | Enzymology |
| 8824151 | Methanogenesis from acetate by cell-free extracts of the thermophilic acetotrophic methanogen Methanothrix thermophila CALS-1 | Allen GWJ, Zinder SH | Arch Microbiol | 10.1007/s002030050384 | 1996 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1490 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3870) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-3870 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 76507 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47769.1 | StrainInfo: A central database for resolving microbial strain identifiers |