Strain identifier
BacDive ID: 7046
Type strain: 
Species: Methanothrix soehngenii
Strain Designation: FE
Strain history: <- J.P. Touzel, FE (Methanothrix soehngenii) <- E. Samain
NCBI tax ID(s): 2223 (species)
version 8.1 (current version)
General
@ref: 1271
BacDive-ID: 7046
DSM-Number: 3013
keywords: 16S sequence, Archaea, anaerobe
description: Methanothrix soehngenii FE is an anaerobe archaeon that was isolated from mesophilic digester.
NCBI tax id
- NCBI tax id: 2223
- Matching level: species
strain history
- @ref: 1271
- history: <- J.P. Touzel, FE (Methanothrix soehngenii) <- E. Samain
doi: 10.13145/bacdive7046.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Methanomicrobia
- order: Methanosarcinales
- family: Methanotrichaceae
- genus: Methanothrix
- species: Methanothrix soehngenii
- full scientific name: Methanothrix soehngenii Huser et al. 1983
synonyms
@ref synonym 20215 Methanosaeta concilii 20215 Methanothrix concilii
@ref: 1271
domain: Archaea
phylum: Euryarchaeota
class: Methanomicrobia
order: Methanosarcinales
family: Methanosaetaceae
genus: Methanothrix
species: Methanothrix soehngenii
full scientific name: Methanosaeta concilii (Patel 1985) Patel and Sprott 1990
strain designation: FE
type strain: no
Morphology
colony morphology
- @ref: 1271
- incubation period: >14 days
Physiology and metabolism
oxygen tolerance
- @ref: 1271
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 1271
- sample type: mesophilic digester
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
- Cat1: #Engineered
- Cat2: #Biodegradation
Safety information
risk assessment
- @ref: 1271
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Methanosaeta concilii 16S ribosomal RNA
- accession: M59146
- length: 1471
- database: ena
- NCBI tax ID: 2223
GC content
- @ref: 1271
- GC-content: 52.0
External links
@ref: 1271
culture collection no.: DSM 3013
straininfo link
- @ref: 76505
- straininfo: 47681
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 1380291 | Characterization of three thermophilic strains of Methanothrix ("Methanosaeta") thermophila sp. nov. and rejection of Methanothrix ("Methanosaeta") thermoacetophila. | Kamagata Y, Kawasaki H, Oyaizu H, Nakamura K, Mikami E, Endo G, Koga Y, Yamasato K | Int J Syst Bacteriol | 10.1099/00207713-42-3-463 | 1992 | Bacterial Proteins/chemistry, Base Composition, Base Sequence, DNA, Bacterial/chemistry, Electrophoresis, Polyacrylamide Gel, Methanosarcinaceae/*classification/cytology/physiology, Molecular Sequence Data, RNA, Bacterial/chemistry, RNA, Ribosomal, 16S/chemistry, Sequence Homology, Nucleic Acid, Terminology as Topic | Enzymology |
| Phylogeny | 16403877 | Methanosaeta harundinacea sp. nov., a novel acetate-scavenging methanogen isolated from a UASB reactor. | Ma K, Liu X, Dong X | Int J Syst Evol Microbiol | 10.1099/ijs.0.63887-0 | 2006 | Acetates/metabolism, Anaerobiosis, Base Composition, Beer, *Bioreactors, China, Culture Media, DNA Restriction Enzymes/genetics, Hydrogen-Ion Concentration, Methane/metabolism, Methanosarcinaceae/chemistry/*classification/isolation & purification/physiology, Molecular Sequence Data, Oxidoreductases/genetics/metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Sewage/*microbiology, Species Specificity | Metabolism |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1271 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3013) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-3013 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 76505 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47681.1 | StrainInfo: A central database for resolving microbial strain identifiers |