Strain identifier
BacDive ID: 7043
Type strain:
Species: Methanolacinia petrolearia
Strain history: <- B. Ollivier, Université de Provence, Marseille, France; SEBR 4847 <- B. Ollivier {1991}
NCBI tax ID(s): 679926 (strain), 54120 (species)
General
@ref: 4325
BacDive-ID: 7043
DSM-Number: 11571
keywords: genome sequence, 16S sequence, Archaea, anaerobe, mesophilic, Gram-negative
description: Methanolacinia petrolearia DSM 11571 is an anaerobe, mesophilic, Gram-negative archaeon that was isolated from offshore oil field.
NCBI tax id
NCBI tax id | Matching level |
---|---|
54120 | species |
679926 | strain |
strain history
- @ref: 4325
- history: <- B. Ollivier, Université de Provence, Marseille, France; SEBR 4847 <- B. Ollivier {1991}
doi: 10.13145/bacdive7043.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Methanomicrobia
- order: Methanomicrobiales
- family: Methanomicrobiaceae
- genus: Methanolacinia
- species: Methanolacinia petrolearia
- full scientific name: Methanolacinia petrolearia (Ollivier et al. 1998) Göker et al. 2015
synonyms
- @ref: 20215
- synonym: Methanoplanus petrolearius
@ref: 4325
domain: Archaea
phylum: Euryarchaeota
class: Methanomicrobia
order: Methanomicrobiales
family: Methanomicrobiaceae
genus: Methanolacinia
species: Methanolacinia petrolearia
full scientific name: Methanolacinia petrolearia (Ollivier et al. 1998) Göker et al. 2015
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.993
multimedia
- @ref: 66793
- multimedia content: EM_DSM_11571_1.jpg
- caption: electron microscopic image
- intellectual property rights: © HZI/Manfred Rohde
Culture and growth conditions
culture medium
- @ref: 4325
- name: METHANOGENIUM MEDIUM (H2/CO2) (DSMZ Medium 141)
- growth: yes
- link: https://mediadive.dsmz.de/medium/141
- composition: Name: METHANOGENIUM MEDIUM (H2/CO2) (DSMZ Medium 141) Composition: NaHCO3 4.89237 g/l MgCl2 x 6 H2O 3.91389 g/l Yeast extract 1.95695 g/l Trypticase peptone 1.95695 g/l Na-acetate 0.978474 g/l Na2S x 9 H2O 0.489237 g/l L-Cysteine HCl x H2O 0.489237 g/l KCl 0.332681 g/l NH4Cl 0.244618 g/l K2HPO4 0.136986 g/l MgSO4 x 7 H2O 0.0293542 g/l Nitrilotriacetic acid 0.0146771 g/l NaCl 0.00978474 g/l MnSO4 x H2O 0.00489237 g/l Fe(NH4)2(SO4)2 x 6 H2O 0.00195695 g/l CoSO4 x 7 H2O 0.00176125 g/l ZnSO4 x 7 H2O 0.00176125 g/l FeSO4 x 7 H2O 0.000978474 g/l CaCl2 x 2 H2O 0.000978474 g/l Sodium resazurin 0.000489237 g/l NiCl2 x 6 H2O 0.000293542 g/l AlK(SO4)2 x 12 H2O 0.000195695 g/l CuSO4 x 5 H2O 9.78474e-05 g/l Pyridoxine hydrochloride 9.78474e-05 g/l Na2MoO4 x 2 H2O 9.78474e-05 g/l H3BO3 9.78474e-05 g/l Nicotinic acid 4.89237e-05 g/l Riboflavin 4.89237e-05 g/l (DL)-alpha-Lipoic acid 4.89237e-05 g/l Thiamine HCl 4.89237e-05 g/l Calcium D-(+)-pantothenate 4.89237e-05 g/l p-Aminobenzoic acid 4.89237e-05 g/l Folic acid 1.95695e-05 g/l Biotin 1.95695e-05 g/l Na2WO4 x 2 H2O 3.91389e-06 g/l Na2SeO3 x 5 H2O 2.93542e-06 g/l Vitamin B12 9.78474e-07 g/l Distilled water
culture temp
- @ref: 4325
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance | confidence |
---|---|---|
4325 | anaerobe | |
69480 | anaerobe | 99.448 |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.779 |
Isolation, sampling and environmental information
isolation
- @ref: 4325
- sample type: offshore oil field
- geographic location: Western African Coast, Gulf of Guinea
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Industrial | #Oil reservoir |
#Environmental | #Aquatic | #Marine |
taxonmaps
- @ref: 69479
- File name: preview.99_187192.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18124;96_68849;97_89495;98_121775;99_187192&stattab=map
- Last taxonomy: Methanolacinia
- 16S sequence: U76631
- Sequence Identity:
- Total samples: 285
- soil counts: 47
- aquatic counts: 198
- animal counts: 4
- plant counts: 36
Safety information
risk assessment
- @ref: 4325
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 4325
- description: Methanoplanus petrolearius 16S ribosomal RNA gene, complete sequence
- accession: U76631
- length: 1429
- database: ena
- NCBI tax ID: 679926
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Methanolacinia petrolearia DSM 11571 | GCA_000147875 | complete | ncbi | 679926 |
66792 | Methanolacinia petrolearia DSM 11571 | 648028040 | complete | img | 679926 |
66792 | Methanoplanus petrolearius DSM 11571 | 679926.6 | complete | patric | 679926 |
GC content
@ref | GC-content | method |
---|---|---|
4325 | 47 | sequence analysis |
4325 | 50 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 90.936 | no |
flagellated | no | 97.024 | no |
gram-positive | no | 96.342 | no |
anaerobic | yes | 99.278 | yes |
aerobic | no | 95.289 | yes |
halophile | no | 82.218 | no |
spore-forming | no | 95.872 | no |
thermophile | no | 91.296 | yes |
glucose-util | yes | 74.233 | no |
glucose-ferment | no | 68.81 | no |
External links
@ref: 4325
culture collection no.: DSM 11571, OCM 486, SEBR 4847
straininfo link
- @ref: 76502
- straininfo: 49139
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 9037763 | Methanoplanus petrolearius sp. nov., a novel methanogenic bacterium from an oil-producing well. | Ollivier B, Cayol JL, Patel BK, Magot M, Fardeau ML, Garcia JL | FEMS Microbiol Lett | 10.1111/j.1574-6968.1997.tb10219.x | 1997 | Bacteriological Techniques, Classification, Culture Media, Cytosine, DNA, Bacterial/analysis, Euryarchaeota/*classification/cytology/*isolation & purification, Guanine, Guinea, Molecular Sequence Data, Oils, RNA, Bacterial/analysis, RNA, Ribosomal, 16S/analysis, Sequence Analysis, RNA, *Soil Microbiology | Cultivation |
Genetics | 21304750 | Complete genome sequence of Methanoplanus petrolearius type strain (SEBR 4847). | Brambilla E, Djao OD, Daligault H, Lapidus A, Lucas S, Hammon N, Nolan M, Tice H, Cheng JF, Han C, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Rohde M, Spring S, Sikorski J, Goker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP | Stand Genomic Sci | 10.4056/sigs.1183143 | 2010 | ||
Genetics | 25197484 | Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279(T)), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia. | Goker M, Lu M, Fiebig A, Nolan M, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Mayilraj S, Rohde M, Detter JC, Bunk B, Spring S, Wirth R, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP | Stand Genomic Sci | 10.4056/sigs.5138968 | 2014 | Phylogeny | |
Phylogeny | 27553654 | Methanomicrobium antiquum sp. nov., a hydrogenotrophic methanogen isolated from deep sedimentary aquifers in a natural gas field. | Mochimaru H, Tamaki H, Katayama T, Imachi H, Sakata S, Kamagata Y | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001444 | 2016 | Base Composition, DNA, Archaeal/genetics, Groundwater/*microbiology, Japan, Methane, Methanomicrobiaceae/*classification/genetics/isolation & purification, *Natural Gas, Oil and Gas Fields/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
4325 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11571) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11571 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
76502 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49139.1 | StrainInfo: A central database for resolving microbial strain identifiers |