Strain identifier
BacDive ID: 7041
Type strain:
Species: Methanoplanus endosymbiosus
Strain Designation: MC1
Strain history: <- G.D. Vogels, MC1
NCBI tax ID(s): 33865 (species)
General
@ref: 1421
BacDive-ID: 7041
DSM-Number: 3599
keywords: genome sequence, 16S sequence, Archaea, anaerobe, mesophilic
description: Methanoplanus endosymbiosus MC1 is an anaerobe, mesophilic archaeon that was isolated from from marine ciliate Metopus contortus.
NCBI tax id
- NCBI tax id: 33865
- Matching level: species
strain history
- @ref: 1421
- history: <- G.D. Vogels, MC1
doi: 10.13145/bacdive7041.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Methanomicrobia
- order: Methanomicrobiales
- family: Methanomicrobiaceae
- genus: Methanoplanus
- species: Methanoplanus endosymbiosus
- full scientific name: Methanoplanus endosymbiosus van Bruggen et al. 1986
@ref: 1421
domain: Archaea
phylum: Euryarchaeota
class: Methanomicrobia
order: Methanomicrobiales
family: Methanomicrobiaceae
genus: Methanoplanus
species: Methanoplanus endosymbiosus
full scientific name: Methanoplanus endosymbiosus van Bruggen et al. 1986
strain designation: MC1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 1421
- name: METHANOGENIUM MEDIUM (H2/CO2) (DSMZ Medium 141)
- growth: yes
- link: https://mediadive.dsmz.de/medium/141
- composition: Name: METHANOGENIUM MEDIUM (H2/CO2) (DSMZ Medium 141) Composition: NaHCO3 4.89237 g/l MgCl2 x 6 H2O 3.91389 g/l Yeast extract 1.95695 g/l Trypticase peptone 1.95695 g/l Na-acetate 0.978474 g/l Na2S x 9 H2O 0.489237 g/l L-Cysteine HCl x H2O 0.489237 g/l KCl 0.332681 g/l NH4Cl 0.244618 g/l K2HPO4 0.136986 g/l MgSO4 x 7 H2O 0.0293542 g/l Nitrilotriacetic acid 0.0146771 g/l NaCl 0.00978474 g/l MnSO4 x H2O 0.00489237 g/l Fe(NH4)2(SO4)2 x 6 H2O 0.00195695 g/l CoSO4 x 7 H2O 0.00176125 g/l ZnSO4 x 7 H2O 0.00176125 g/l FeSO4 x 7 H2O 0.000978474 g/l CaCl2 x 2 H2O 0.000978474 g/l Sodium resazurin 0.000489237 g/l NiCl2 x 6 H2O 0.000293542 g/l AlK(SO4)2 x 12 H2O 0.000195695 g/l CuSO4 x 5 H2O 9.78474e-05 g/l Pyridoxine hydrochloride 9.78474e-05 g/l Na2MoO4 x 2 H2O 9.78474e-05 g/l H3BO3 9.78474e-05 g/l Nicotinic acid 4.89237e-05 g/l Riboflavin 4.89237e-05 g/l (DL)-alpha-Lipoic acid 4.89237e-05 g/l Thiamine HCl 4.89237e-05 g/l Calcium D-(+)-pantothenate 4.89237e-05 g/l p-Aminobenzoic acid 4.89237e-05 g/l Folic acid 1.95695e-05 g/l Biotin 1.95695e-05 g/l Na2WO4 x 2 H2O 3.91389e-06 g/l Na2SeO3 x 5 H2O 2.93542e-06 g/l Vitamin B12 9.78474e-07 g/l Distilled water
culture temp
- @ref: 1421
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 1421
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 1421
- sample type: from marine ciliate Metopus contortus
- host species: Metopus contortus
- geographic location: Country of origin unknown, Wadden Sea
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Marine |
#Host | #Protozoa |
taxonmaps
- @ref: 69479
- File name: preview.99_187309.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18124;96_68922;97_89575;98_121867;99_187309&stattab=map
- Last taxonomy: Methanoplanus
- 16S sequence: FR733674
- Sequence Identity:
- Total samples: 189
- soil counts: 31
- aquatic counts: 153
- animal counts: 1
- plant counts: 4
Safety information
risk assessment
- @ref: 1421
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Methanoplanus endosymbiosus gene for 16S ribosomal RNA, partial sequence, strain: DSM 3599 | AB370248 | 1399 | ena | 33865 |
20218 | M.endosymbiosus (DSM 3599) mRNA for 16S ribosomal RNA | Z29435 | 949 | ena | 33865 |
1421 | Methanoplanus endosymbiosus partial 16S rRNA gene, type strain DSM3599T | FR733674 | 1464 | ena | 33865 |
Genome sequences
- @ref: 66792
- description: Methanoplanus endosymbiosus DSM 3599
- accession: GCA_024662215
- assembly level: complete
- database: ncbi
- NCBI tax ID: 33865
GC content
- @ref: 1421
- GC-content: 38.7
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 96.976 | no |
gram-positive | no | 96.767 | no |
anaerobic | yes | 99.282 | yes |
aerobic | no | 97.233 | yes |
halophile | no | 84.743 | no |
spore-forming | no | 93.805 | no |
glucose-ferment | no | 57.146 | no |
thermophile | no | 93.97 | yes |
glucose-util | yes | 74.506 | no |
motile | no | 91.335 | no |
External links
@ref: 1421
culture collection no.: DSM 3599, OCM 102
straininfo link
- @ref: 76500
- straininfo: 47732
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
1421 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3599) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-3599 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
76500 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47732.1 | StrainInfo: A central database for resolving microbial strain identifiers |