Strain identifier
BacDive ID: 7040
Type strain: 
Species: Methanomicrobium mobile
Strain Designation: 1, BP
Strain history: DSM 1539 <-- R. S. Wolfe BP <-- P. H. Smith <-- M. J. B. Paynter and R. E. Hungate 1.
NCBI tax ID(s): 694440 (strain), 2205 (species)
version 9.3 (current version)
General
@ref: 816
BacDive-ID: 7040
DSM-Number: 1539
keywords: genome sequence, 16S sequence, Archaea, anaerobe, mesophilic
description: Methanomicrobium mobile 1 is an anaerobe, mesophilic archaeon that was isolated from bovine rumen.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 694440 | strain |
| 2205 | species |
strain history
| @ref | history |
|---|---|
| 816 | <- J. A. Leigh, University of Illinois, Urbana, USA; BP <- R. S. Wolfe; <- M. J. B. Paynter and R. E. Hungate, University of California, Davis, USA; |
| 67770 | DSM 1539 <-- R. S. Wolfe BP <-- P. H. Smith <-- M. J. B. Paynter and R. E. Hungate 1. |
doi: 10.13145/bacdive7040.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Methanomicrobia
- order: Methanomicrobiales
- family: Methanomicrobiaceae
- genus: Methanomicrobium
- species: Methanomicrobium mobile
- full scientific name: Methanomicrobium mobile (Paynter and Hungate 1968) Balch and Wolfe 1981
synonyms
@ref synonym 20215 Methanobacterium mobile 20215 Methanobacterium mobilis
@ref: 816
domain: Archaea
phylum: Euryarchaeota
class: Methanomicrobia
order: Methanomicrobiales
family: Methanomicrobiaceae
genus: Methanomicrobium
species: Methanomicrobium mobile
full scientific name: Methanomicrobium mobile (Paynter and Hungate 1968) Balch and Wolfe 1981
strain designation: 1, BP
type strain: yes
Morphology
cell morphology
- @ref: 125439
- gram stain: negative
- confidence: 95.8
Culture and growth conditions
culture medium
- @ref: 816
- name: METHANOMICROBIUM MOBILE MEDIUM (DSMZ Medium 666b)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium666b.pdf
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 67770 | positive | growth | 37 |
| 816 | positive | growth | 37 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 816 | anaerobe | |
| 125439 | anaerobe | 95.9 |
spore formation
- @ref: 125439
- spore formation: no
- confidence: 99.4
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 816 | bovine rumen | USA | USA | North America |
| 67770 | Bovine rumen contents |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Bovinae (Cow, Cattle) |
| #Host Body-Site | #Organ | #Rumen |
taxonmaps
- @ref: 69479
- File name: preview.99_187222.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18124;96_68874;97_89521;98_121802;99_187222&stattab=map
- Last taxonomy: Methanomicrobium mobile subclade
- 16S sequence: AY196679
- Sequence Identity:
- Total samples: 690
- soil counts: 54
- aquatic counts: 67
- animal counts: 510
- plant counts: 59
Safety information
risk assessment
- @ref: 816
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Methanomicrobium mobile BP strain DSM 1539 16S ribosomal RNA gene, partial sequence | M59142 | 1469 | nuccore | 694440 |
| 816 | Methanomicrobium mobile 16S ribosomal RNA gene, partial sequence | AY196679 | 1255 | nuccore | 2205 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Methanomicrobium mobile DSM 1539 | 2571042922 | draft | img | 694440 |
| 67770 | Methanomicrobium mobile BP | GCA_000711215 | contig | ncbi | 694440 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 816 | 48.8 | |
| 67770 | 48.8 | Buoyant density centrifugation (BD) |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence |
|---|---|---|---|---|---|
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 99.4 |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 77.4 |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 95.8 |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | anaerobe | 95.9 |
External links
@ref: 816
culture collection no.: DSM 1539, ATCC 35094, JCM 10551
straininfo link
- @ref: 76499
- straininfo: 44995
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 816 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1539) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1539 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 76499 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID44995.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |