Strain identifier
BacDive ID: 700
Type strain: 
Species: Bacillus licheniformis
Strain Designation: ES1-140-3
Strain history: <- European Space Agency, Noordwijk, Netherlands; ES1-140-3 <- P. Rettberg and S. Barczyk, DLR, Köln, Germany
NCBI tax ID(s): 1402 (species)
version 8.1 (current version)
General
@ref: 16892
BacDive-ID: 700
DSM-Number: 30523
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, motile, human pathogen
description: Bacillus licheniformis ES1-140-3 is a spore-forming, mesophilic, motile human pathogen that was isolated from spacecraft-associated clean room class ISO 8, Herschel Space Observatory.
NCBI tax id
- NCBI tax id: 1402
- Matching level: species
strain history
- @ref: 16892
- history: <- European Space Agency, Noordwijk, Netherlands; ES1-140-3 <- P. Rettberg and S. Barczyk, DLR, Köln, Germany
doi: 10.13145/bacdive700.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus licheniformis
- full scientific name: Bacillus licheniformis (Weigmann 1898) Chester 1901 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Clostridium licheniforme
@ref: 16892
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus licheniformis
full scientific name: Bacillus licheniformis (Weigmann 1898) Chester 1901
strain designation: ES1-140-3
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 96.3 | |
| 69480 | 100 | positive |
multimedia
- @ref: 16892
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_30523.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 16892
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 16892
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 16892
- sample type: spacecraft-associated clean room class ISO 8, Herschel Space Observatory
- geographic location: Noordwijk, European Space Research and Technology Centre
- country: Netherlands
- origin.country: NLD
- continent: Europe
isolation source categories
- Cat1: #Engineered
- Cat2: #Built environment
- Cat3: #Clean room
Safety information
risk assessment
- @ref: 16892
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16892
- description: Bacillus licheniformis partial 16S rRNA gene, strain ES-140-3
- accession: FN393818
- length: 1382
- database: ena
- NCBI tax ID: 1402
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bacillus licheniformis DSM 30523 | GCA_007831325 | scaffold | ncbi | 1402 |
| 66792 | Bacillus licheniformis strain DSM 30523 | 1402.327 | wgs | patric | 1402 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | yes | 90.882 | no |
| flagellated | yes | 89.799 | no |
| gram-positive | yes | 89.386 | no |
| anaerobic | no | 98.242 | no |
| aerobic | yes | 86.082 | no |
| halophile | yes | 79.706 | no |
| spore-forming | yes | 96.707 | no |
| thermophile | no | 93.907 | yes |
| glucose-util | yes | 87.894 | no |
| glucose-ferment | no | 89.432 | no |
External links
@ref: 16892
culture collection no.: DSM 30523
straininfo link
- @ref: 70375
- straininfo: 403671
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16892 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 30523) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-30523 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 70375 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID403671.1 | StrainInfo: A central database for resolving microbial strain identifiers |