Strain identifier
BacDive ID: 7
Type strain:
Species: Acetobacter pasteurianus
Strain Designation: BU 343
Strain history: IAM 1817 <-- T. Asai A-6 ("Acetobacter kuetzingainus") <-- IFO 3222 <-- ATCC 6439 <-- A. J. Kluyver.
NCBI tax ID(s): 1226664 (strain), 438 (species)
General
@ref: 12591
BacDive-ID: 7
DSM-Number: 46619
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Acetobacter pasteurianus BU 343 is a mesophilic, Gram-negative bacterium of the family Acetobacteraceae.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1226664 | strain |
438 | species |
strain history
@ref | history |
---|---|
12591 | <- IMET <- K. Karbaum (Acetobacter kuetzingianus, CCM 1771) |
67770 | IAM 1817 <-- T. Asai A-6 ("Acetobacter kuetzingainus") <-- IFO 3222 <-- ATCC 6439 <-- A. J. Kluyver. |
doi: 10.13145/bacdive7.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Acetobacter
- species: Acetobacter pasteurianus
- full scientific name: Acetobacter pasteurianus (Hansen 1879) Beijerinck and Folpmers 1916 (Approved Lists 1980)
synonyms
@ref synonym 20215 Acetobacter peroxydans 20215 Acetobacter paradoxus 20215 Acetobacter paradoxum 20215 Acetobacter pasteurianus subsp. ascendens 20215 Bacterium ascendens 20215 Acetobacter ascendens 20215 Acetobacter pasteurianus subsp. paradoxus 20215 Mycoderma pasteurianum
@ref: 12591
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Acetobacter
species: Acetobacter pasteurianus
full scientific name: Acetobacter pasteurianus (Hansen 1879) Beijerinck and Folpmers 1916
strain designation: BU 343
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 96
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
12591 | YPM MEDIUM (DSMZ Medium 360) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium360.pdf | |
12591 | GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105) | yes | https://mediadive.dsmz.de/medium/105 | Name: GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105) Composition: Glucose 100.0 g/l CaCO3 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Distilled water |
culture temp
@ref | growth | type | temperature |
---|---|---|---|
12591 | positive | growth | 28 |
67770 | positive | growth | 25 |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | no | 92.216 |
69481 | no | 100 |
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_214.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_163;98_182;99_214&stattab=map
- Last taxonomy: Acetobacter
- 16S sequence: AB680030
- Sequence Identity:
- Total samples: 12367
- soil counts: 1742
- aquatic counts: 1945
- animal counts: 7743
- plant counts: 937
Safety information
risk assessment
- @ref: 12591
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Acetobacter pasteurianus gene for 16S rRNA, partial sequence, strain: NBRC 3222
- accession: AB680030
- length: 1413
- database: nuccore
- NCBI tax ID: 438
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Acetobacter pasteurianus NBRC 3222 | 1226664.3 | wgs | patric | 1226664 |
66792 | Acetobacter pasteurianus NBRC 3222 | 2905218981 | draft | img | 438 |
67770 | Acetobacter pasteurianus NBRC 3222 | GCA_003850845 | contig | ncbi | 1226664 |
Genome-based predictions
predictions
@ref | trait | model | description | prediction | confidence | training_data |
---|---|---|---|---|---|---|
69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 96 | no |
69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 85.456 | no |
69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 92.216 | no |
69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 77.879 | no |
69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98.212 | no |
69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 74.106 | no |
External links
@ref: 12591
culture collection no.: DSM 46619, ATCC 6439, CCM 1771, IFO 3222, IMET 10602, Lock 83, NBRC 3222, NCIB 3924, NCTC 3924, JCM 20279, IAM 1817, LMD 39.4, LMG 1577, NCIMB 3924
straininfo link
- @ref: 69691
- straininfo: 92067
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
12591 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46619) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-46619 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
69691 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID92067.1 | StrainInfo: A central database for resolving microbial strain identifiers |