Strain identifier
BacDive ID: 6990
Type strain: 
Species: Methanococcus maripaludis
Strain Designation: Delta RC
Strain history: <- J.I. Frea, Delta RC
NCBI tax ID(s): 39152 (species)
version 9.3 (current version)
General
@ref: 1217
BacDive-ID: 6990
DSM-Number: 2771
keywords: genome sequence, Archaea, anaerobe, mesophilic
description: Methanococcus maripaludis Delta RC is an anaerobe, mesophilic archaeon that was isolated from mud.
NCBI tax id
- NCBI tax id: 39152
- Matching level: species
strain history
- @ref: 1217
- history: <- J.I. Frea, Delta RC
doi: 10.13145/bacdive6990.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Methanococci
- order: Methanococcales
- family: Methanococcaceae
- genus: Methanococcus
- species: Methanococcus maripaludis
- full scientific name: Methanococcus maripaludis Jones et al. 1984
synonyms
- @ref: 20215
- synonym: Methanococcus deltae
@ref: 1217
domain: Archaea
phylum: Euryarchaeota
class: Methanococci
order: Methanococcales
family: Methanococcaceae
genus: Methanococcus
species: Methanococcus maripaludis
full scientific name: Methanococcus maripaludis Jones et al. 1984
strain designation: Delta RC
type strain: no
Morphology
cell morphology
- @ref: 125439
- gram stain: negative
- confidence: 99.3
Culture and growth conditions
culture medium
- @ref: 1217
- name: METHANOCOCCUS MARIPALUDIS MEDIUM (DSMZ Medium 288)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium288.pdf
culture temp
- @ref: 1217
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 1217
- oxygen tolerance: anaerobe
spore formation
- @ref: 125439
- spore formation: no
- confidence: 96
Isolation, sampling and environmental information
isolation
- @ref: 1217
- sample type: mud
- geographic location: Gulf of Mexico, East Bay, Mississippi River delta
- country: Mexico
- origin.country: MEX
- continent: North America
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Mud (Sludge)
Safety information
risk assessment
- @ref: 1217
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Methanococcus maripaludis DSM 2771 | GCA_017875815 | contig | ncbi | 39152 |
| 66792 | Methanococcus deltae DSM 2771 | 2913333627 | draft | img | 39152 |
GC content
- @ref: 1217
- GC-content: 40.5
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence |
|---|---|---|---|---|---|
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 96 |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 77.6 |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 99.3 |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 88 |
External links
@ref: 1217
culture collection no.: DSM 2771, ATCC 35294
straininfo link
- @ref: 76451
- straininfo: 45008
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 1217 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2771) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-2771 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 76451 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID45008.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |