Strain identifier
BacDive ID: 6987
Type strain:
Species: Methanotorris igneus
Strain history: DSM 5666 <-- K. O. Stetter and S. Burggraf Kol 5.
NCBI tax ID(s): 880724 (strain), 2189 (species)
General
@ref: 2151
BacDive-ID: 6987
DSM-Number: 5666
keywords: genome sequence, 16S sequence, Archaea, anaerobe, hyperthermophilic
description: Methanotorris igneus DSM 5666 is an anaerobe, hyperthermophilic archaeon that was isolated from marine hydrothermal system.
NCBI tax id
NCBI tax id | Matching level |
---|---|
2189 | species |
880724 | strain |
strain history
@ref | history |
---|---|
2151 | <- K.O. Stetter and S. Burggraf, Kol 5 |
67770 | DSM 5666 <-- K. O. Stetter and S. Burggraf Kol 5. |
doi: 10.13145/bacdive6987.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Methanococci
- order: Methanococcales
- family: Methanocaldococcaceae
- genus: Methanotorris
- species: Methanotorris igneus
- full scientific name: Methanotorris igneus (Burggraf et al. 1990) Whitman 2002
synonyms
- @ref: 20215
- synonym: Methanococcus igneus
@ref: 2151
domain: Archaea
phylum: Euryarchaeota
class: Methanococci
order: Methanococcales
family: Methanocaldococcaceae
genus: Methanotorris
species: Methanotorris igneus
full scientific name: Methanotorris igneus (Burggraf et al. 1990) Whitman 2002
type strain: yes
Culture and growth conditions
culture medium
- @ref: 2151
- name: METHANOCALDOCOCCUS MEDIUM (DSMZ Medium 282)
- growth: yes
- link: https://mediadive.dsmz.de/medium/282
- composition: Name: METHANOCALDOCOCCUS MEDIUM (DSMZ Medium 282) Composition: MgCl2 x 6 H2O 4.05138 g/l NaHCO3 0.988142 g/l Na2S x 9 H2O 0.494071 g/l L-Cysteine HCl x H2O 0.494071 g/l KCl 0.326087 g/l NH4Cl 0.247036 g/l K2HPO4 0.13834 g/l MgSO4 x 7 H2O 0.0296443 g/l Nitrilotriacetic acid 0.0148221 g/l NaCl 0.00988142 g/l Fe(NH4)2(SO4)2 x 6 H2O 0.00988142 g/l MnSO4 x H2O 0.00494071 g/l ZnSO4 x 7 H2O 0.00177866 g/l CoSO4 x 7 H2O 0.00177866 g/l CaCl2 x 2 H2O 0.000988142 g/l FeSO4 x 7 H2O 0.000988142 g/l Sodium resazurin 0.000494071 g/l NiCl2 x 6 H2O 0.000296443 g/l AlK(SO4)2 x 12 H2O 0.000197628 g/l Na2MoO4 x 2 H2O 9.88142e-05 g/l CuSO4 x 5 H2O 9.88142e-05 g/l H3BO3 9.88142e-05 g/l Pyridoxine hydrochloride 9.88142e-05 g/l Thiamine HCl 4.94071e-05 g/l (DL)-alpha-Lipoic acid 4.94071e-05 g/l p-Aminobenzoic acid 4.94071e-05 g/l Riboflavin 4.94071e-05 g/l Nicotinic acid 4.94071e-05 g/l Calcium D-(+)-pantothenate 4.94071e-05 g/l Biotin 1.97628e-05 g/l Folic acid 1.97628e-05 g/l Na2WO4 x 2 H2O 3.95257e-06 g/l Na2SeO3 x 5 H2O 2.96443e-06 g/l Vitamin B12 9.88142e-07 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
2151 | positive | growth | 85 | hyperthermophilic |
67770 | positive | growth | 85 | hyperthermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 2151
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
2151 | marine hydrothermal system | Kolbeinsey | Iceland | ISL | Europe |
67770 | Shallow submarine hydrothermal system at the Kolbeinsey ridge | Iceland | ISL | Europe |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Marine |
#Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 2151
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 2151
- description: Methanococcus igneus 16S ribosomal RNA
- accession: M59125
- length: 1406
- database: ena
- NCBI tax ID: 2189
Genome sequences
- @ref: 66792
- description: Methanotorris igneus Kol5, DSM 5666
- accession: 650716056
- assembly level: complete
- database: img
- NCBI tax ID: 880724
GC content
@ref | GC-content | method |
---|---|---|
2151 | 31.0 | |
67770 | 31 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 2151
culture collection no.: DSM 5666, JCM 11834, Kol 5
straininfo link
- @ref: 76448
- straininfo: 47969
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 11538305 | Methanococcus igneus sp. nov., a novel hyperthermophilic methanogen from a shallow submarine hydrothermal system. | Burggraf S, Fricke H, Neuner A, Kristjansson J, Rouvier P, Mandelco L, Woese CR, Stetter KO | Syst Appl Microbiol | 10.1016/s0723-2020(11)80197-9 | 1990 | Archaea/*classification/genetics/isolation & purification, Base Sequence, Biological Evolution, DNA, Bacterial/genetics, Euryarchaeota/*classification/genetics/isolation & purification, Hot Temperature, Iceland, Marine Biology, Methanococcus/*classification/genetics/isolation & purification, Oceans and Seas, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/*genetics, Sequence Homology, Nucleic Acid, *Water Microbiology | Enzymology |
Phylogeny | 15280275 | Methanotorris formicicus sp. nov., a novel extremely thermophilic, methane-producing archaeon isolated from a black smoker chimney in the Central Indian Ridge. | Takai K, Nealson KH, Horikoshi K | Int J Syst Evol Microbiol | 10.1099/ijs.0.02887-0 | 2004 | Anaerobiosis, Base Composition, Carbon Dioxide/metabolism, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry, Flagella/ultrastructure, Formates/metabolism, Genes, rRNA, Hydrogen/metabolism, Hydrogen-Ion Concentration, Indian Ocean, Methane/*metabolism, Methanococcales/*classification/cytology/growth & development/*isolation & purification, Molecular Sequence Data, Movement, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Temperature, Water Microbiology | Metabolism |
Phylogeny | 30843780 | Methanofervidicoccus abyssi gen. nov., sp. nov., a hydrogenotrophic methanogen, isolated from a hydrothermal vent chimney in the Mid-Cayman Spreading Center, the Caribbean Sea. | Sakai S, Takaki Y, Miyazaki M, Ogawara M, Yanagawa K, Miyazaki J, Takai K | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003297 | 2019 | Caribbean Region, DNA, Archaeal/genetics, Genes, Archaeal, Hydrothermal Vents/*microbiology, Methanococcaceae/*classification/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater, Sequence Analysis, DNA, Temperature | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
2151 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5666) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-5666 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
76448 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47969.1 | StrainInfo: A central database for resolving microbial strain identifiers |