Strain identifier

BacDive ID: 6987

Type strain: Yes

Species: Methanotorris igneus

Strain history: DSM 5666 <-- K. O. Stetter and S. Burggraf Kol 5.

NCBI tax ID(s): 880724 (strain), 2189 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 2151

BacDive-ID: 6987

DSM-Number: 5666

keywords: genome sequence, 16S sequence, Archaea, anaerobe, hyperthermophilic

description: Methanotorris igneus DSM 5666 is an anaerobe, hyperthermophilic archaeon that was isolated from marine hydrothermal system.

NCBI tax id

NCBI tax idMatching level
2189species
880724strain

strain history

@refhistory
2151<- K.O. Stetter and S. Burggraf, Kol 5
67770DSM 5666 <-- K. O. Stetter and S. Burggraf Kol 5.

doi: 10.13145/bacdive6987.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Methanococci
  • order: Methanococcales
  • family: Methanocaldococcaceae
  • genus: Methanotorris
  • species: Methanotorris igneus
  • full scientific name: Methanotorris igneus (Burggraf et al. 1990) Whitman 2002
  • synonyms

    • @ref: 20215
    • synonym: Methanococcus igneus

@ref: 2151

domain: Archaea

phylum: Euryarchaeota

class: Methanococci

order: Methanococcales

family: Methanocaldococcaceae

genus: Methanotorris

species: Methanotorris igneus

full scientific name: Methanotorris igneus (Burggraf et al. 1990) Whitman 2002

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 2151
  • name: METHANOCALDOCOCCUS MEDIUM (DSMZ Medium 282)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/282
  • composition: Name: METHANOCALDOCOCCUS MEDIUM (DSMZ Medium 282) Composition: MgCl2 x 6 H2O 4.05138 g/l NaHCO3 0.988142 g/l Na2S x 9 H2O 0.494071 g/l L-Cysteine HCl x H2O 0.494071 g/l KCl 0.326087 g/l NH4Cl 0.247036 g/l K2HPO4 0.13834 g/l MgSO4 x 7 H2O 0.0296443 g/l Nitrilotriacetic acid 0.0148221 g/l NaCl 0.00988142 g/l Fe(NH4)2(SO4)2 x 6 H2O 0.00988142 g/l MnSO4 x H2O 0.00494071 g/l ZnSO4 x 7 H2O 0.00177866 g/l CoSO4 x 7 H2O 0.00177866 g/l CaCl2 x 2 H2O 0.000988142 g/l FeSO4 x 7 H2O 0.000988142 g/l Sodium resazurin 0.000494071 g/l NiCl2 x 6 H2O 0.000296443 g/l AlK(SO4)2 x 12 H2O 0.000197628 g/l Na2MoO4 x 2 H2O 9.88142e-05 g/l CuSO4 x 5 H2O 9.88142e-05 g/l H3BO3 9.88142e-05 g/l Pyridoxine hydrochloride 9.88142e-05 g/l Thiamine HCl 4.94071e-05 g/l (DL)-alpha-Lipoic acid 4.94071e-05 g/l p-Aminobenzoic acid 4.94071e-05 g/l Riboflavin 4.94071e-05 g/l Nicotinic acid 4.94071e-05 g/l Calcium D-(+)-pantothenate 4.94071e-05 g/l Biotin 1.97628e-05 g/l Folic acid 1.97628e-05 g/l Na2WO4 x 2 H2O 3.95257e-06 g/l Na2SeO3 x 5 H2O 2.96443e-06 g/l Vitamin B12 9.88142e-07 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
2151positivegrowth85hyperthermophilic
67770positivegrowth85hyperthermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 2151
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
2151marine hydrothermal systemKolbeinseyIcelandISLEurope
67770Shallow submarine hydrothermal system at the Kolbeinsey ridgeIcelandISLEurope

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Condition#Thermophilic (>45°C)

Safety information

risk assessment

  • @ref: 2151
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 2151
  • description: Methanococcus igneus 16S ribosomal RNA
  • accession: M59125
  • length: 1406
  • database: ena
  • NCBI tax ID: 2189

Genome sequences

  • @ref: 66792
  • description: Methanotorris igneus Kol5, DSM 5666
  • accession: 650716056
  • assembly level: complete
  • database: img
  • NCBI tax ID: 880724

GC content

@refGC-contentmethod
215131.0
6777031thermal denaturation, midpoint method (Tm)

External links

@ref: 2151

culture collection no.: DSM 5666, JCM 11834, Kol 5

straininfo link

  • @ref: 76448
  • straininfo: 47969

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11538305Methanococcus igneus sp. nov., a novel hyperthermophilic methanogen from a shallow submarine hydrothermal system.Burggraf S, Fricke H, Neuner A, Kristjansson J, Rouvier P, Mandelco L, Woese CR, Stetter KOSyst Appl Microbiol10.1016/s0723-2020(11)80197-91990Archaea/*classification/genetics/isolation & purification, Base Sequence, Biological Evolution, DNA, Bacterial/genetics, Euryarchaeota/*classification/genetics/isolation & purification, Hot Temperature, Iceland, Marine Biology, Methanococcus/*classification/genetics/isolation & purification, Oceans and Seas, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/*genetics, Sequence Homology, Nucleic Acid, *Water MicrobiologyEnzymology
Phylogeny15280275Methanotorris formicicus sp. nov., a novel extremely thermophilic, methane-producing archaeon isolated from a black smoker chimney in the Central Indian Ridge.Takai K, Nealson KH, Horikoshi KInt J Syst Evol Microbiol10.1099/ijs.0.02887-02004Anaerobiosis, Base Composition, Carbon Dioxide/metabolism, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry, Flagella/ultrastructure, Formates/metabolism, Genes, rRNA, Hydrogen/metabolism, Hydrogen-Ion Concentration, Indian Ocean, Methane/*metabolism, Methanococcales/*classification/cytology/growth & development/*isolation & purification, Molecular Sequence Data, Movement, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Temperature, Water MicrobiologyMetabolism
Phylogeny30843780Methanofervidicoccus abyssi gen. nov., sp. nov., a hydrogenotrophic methanogen, isolated from a hydrothermal vent chimney in the Mid-Cayman Spreading Center, the Caribbean Sea.Sakai S, Takaki Y, Miyazaki M, Ogawara M, Yanagawa K, Miyazaki J, Takai KInt J Syst Evol Microbiol10.1099/ijsem.0.0032972019Caribbean Region, DNA, Archaeal/genetics, Genes, Archaeal, Hydrothermal Vents/*microbiology, Methanococcaceae/*classification/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater, Sequence Analysis, DNA, TemperatureTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2151Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5666)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5666
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
76448Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID47969.1StrainInfo: A central database for resolving microbial strain identifiers