Strain identifier

BacDive ID: 6984

Type strain: Yes

Species: Methanocaldococcus fervens

Strain Designation: AG86

Culture col. no.: DSM 4213, JCM 15782

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 1616

BacDive-ID: 6984

DSM-Number: 4213

keywords: hyperthermophilic, anaerobe, Archaea, 16S sequence, genome sequence

description: Methanocaldococcus fervens AG86 is an anaerobe, hyperthermophilic archaeon that was isolated from core sample from a deep sea hydrothermal vent.

strain history: <- H. Zhao and M.P. Bryant, AG86

doi: 10.13145/bacdive6984.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/euryarchaeota
  • domain: Archaea
  • phylum: Euryarchaeota
  • class: Methanococci
  • order: Methanococcales
  • family: Methanocaldococcaceae
  • genus: Methanocaldococcus
  • species: Methanocaldococcus fervens
  • full scientific name: Methanocaldococcus fervens (Jeanthon et al. 1999) Whitman 2002
  • synonyms

    • @ref: 20215
    • synonym: Methanococcus fervens

@ref: 1616

domain: Archaea

phylum: Euryarchaeota

class: Methanococci

order: Methanococcales

family: Methanocaldococcaceae

genus: Methanocaldococcus

species: Methanocaldococcus fervens

full scientific name: Methanocaldococcus fervens (Jeanthon et al. 1999) Whitman 2002

strain designation: AG86

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 1616
  • name: METHANOCALDOCOCCUS MEDIUM (DSMZ Medium 282), anaerobic
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium282.pdf

culture temp

  • @ref: 1616
  • growth: positive
  • type: growth
  • temperature: 85
  • range: hyperthermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 1616
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 1616
  • sample type: core sample from a deep sea hydrothermal vent
  • geographic location: Gulf of California, Guayamas Basin
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Hydrothermal vent
#Environmental#Aquatic#Marine
#Environmental#Terrestrial#Core sample
#Condition#Thermophilic (>45°C)

Safety information

risk assessment

  • @ref: 1616
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Methanococcus fervens 16S ribosomal RNA gene, partial sequence
  • accession: AF056938
  • length: 1398
  • database: ena
  • NCBI tax ID: 573064

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Methanocaldococcus fervens AG86573064.13plasmidpatric573064
66792Methanocaldococcus fervens AG86573064.11completepatric573064

GC content

  • @ref: 1616
  • GC-content: 33.0
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 1616

culture collection no.: DSM 4213, JCM 15782

straininfo link

@refpassport
20218http://www.straininfo.net/strains/158695
20218http://www.straininfo.net/strains/842160

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1616Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4213)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4213
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)