Strain identifier
BacDive ID: 6971
Type strain:
Species: Methanobrevibacter cuticularis
Strain Designation: RFM-1
Strain history: <- J. R. Leadbetter and J. A. Breznak, Michigan State University, Center for Microbial Ecology, E. Lansing, USA; RFM-1 <- J. R. Leadbetter and J. A. Breznak {1994}
NCBI tax ID(s): 47311 (species)
General
@ref: 4219
BacDive-ID: 6971
DSM-Number: 11139
keywords: genome sequence, Archaea, anaerobe, mesophilic
description: Methanobrevibacter cuticularis RFM-1 is an anaerobe, mesophilic archaeon that was isolated from hindgut of termite Reticulitermes flavipes.
NCBI tax id
- NCBI tax id: 47311
- Matching level: species
strain history
- @ref: 4219
- history: <- J. R. Leadbetter and J. A. Breznak, Michigan State University, Center for Microbial Ecology, E. Lansing, USA; RFM-1 <- J. R. Leadbetter and J. A. Breznak {1994}
doi: 10.13145/bacdive6971.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Methanobacteria
- order: Methanobacteriales
- family: Methanobacteriaceae
- genus: Methanobrevibacter
- species: Methanobrevibacter cuticularis
- full scientific name: Methanobrevibacter cuticularis Leadbetter and Breznak 1997
@ref: 4219
domain: Archaea
phylum: Euryarchaeota
class: Methanobacteria
order: Methanobacteriales
family: Methanobacteriaceae
genus: Methanobrevibacter
species: Methanobrevibacter cuticularis
full scientific name: Methanobrevibacter cuticularis Leadbetter and Breznak 1997
strain designation: RFM-1
type strain: yes
Morphology
colony morphology
- @ref: 4219
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 4219
- name: METHANOBREVIBACTER CUTICULARIS MEDIUM (DSMZ Medium 734a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/734a
- composition: Name: METHANOBREVIBACTER CUTICULARIS MEDIUM (DSMZ Medium 734a) Composition: MOPS 2.1 g/l Na2CO3 2.0 g/l NaCl 1.0 g/l Casamino acids 0.5 g/l KCl 0.5 g/l Yeast extract 0.5 g/l MgCl2 x 6 H2O 0.4 g/l NH4Cl 0.3 g/l KH2PO4 0.2 g/l DL-Dithiothreitol 0.16 g/l Na2SO4 0.15 g/l CaCl2 x 2 H2O 0.1 g/l HCl 0.0025 g/l FeCl2 x 4 H2O 0.0015 g/l NaOH 0.0005 g/l Sodium resazurin 0.0005 g/l Pyridoxine hydrochloride 0.0003 g/l Nicotinic acid 0.0002 g/l Thiamine-HCl x 2 H2O 0.0002 g/l CoCl2 x 6 H2O 0.00019 g/l Calcium pantothenate 0.0001 g/l Vitamin B12 0.0001 g/l MnCl2 x 4 H2O 0.0001 g/l p-Aminobenzoic acid 8e-05 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l D-(+)-biotin 2e-05 g/l H3BO3 6e-06 g/l Na2WO4 x 2 H2O 4e-06 g/l Na2SeO3 x 5 H2O 3e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Rumen fluid Distilled water
culture temp
- @ref: 4219
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 4219
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 4219
- sample type: hindgut of termite Reticulitermes flavipes
- host species: Reticulitermes flavipes
- geographic location: Michigan, Dansville
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Arthropoda | #Insecta |
#Host Body-Site | #Gastrointestinal tract |
Safety information
risk assessment
- @ref: 4219
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Methanobrevibacter cuticularis DSM 11139 | GCA_001639285 | contig | ncbi | 47311 |
66792 | Methanobrevibacter cuticularis DSM11139 | 2684622743 | draft | img | 47311 |
66792 | Methanobrevibacter cuticularis strain DSM 11139 | 47311.3 | wgs | patric | 47311 |
GC content
- @ref: 4219
- GC-content: 26.8
- method: sequence analysis
External links
@ref: 4219
culture collection no.: DSM 11139
straininfo link
- @ref: 76433
- straininfo: 49040
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 8837417 | Physiological ecology of Methanobrevibacter cuticularis sp. nov. and Methanobrevibacter curvatus sp. nov., isolated from the hindgut of the termite Reticulitermes flavipes. | Leadbetter JR, Breznak JA | Appl Environ Microbiol | 10.1128/aem.62.10.3620-3631.1996 | 1996 | Animals, Catalase/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Digestive System/microbiology, Ecology, Insecta/*microbiology, Methane/metabolism, Methanobacteriaceae/classification/drug effects/*isolation & purification/*physiology, Molecular Sequence Data, Oxygen/pharmacology, Phylogeny, RNA, Ribosomal/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid | Metabolism |
Genetics | 27340077 | Draft Genome Sequences of Methanobrevibacter curvatus DSM11111, Methanobrevibacter cuticularis DSM11139, Methanobrevibacter filiformis DSM11501, and Methanobrevibacter oralis DSM7256. | Poehlein A, Seedorf H | Genome Announc | 10.1128/genomeA.00617-16 | 2016 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
4219 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11139) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11139 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
76433 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49040.1 | StrainInfo: A central database for resolving microbial strain identifiers |