Strain identifier

BacDive ID: 6961

Type strain: No

Species: Methanobrevibacter arboriphilus

Strain Designation: SA

Strain history: S. Asakawa SA.

NCBI tax ID(s): 1293039 (strain), 39441 (species)

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General

@ref: 2962

BacDive-ID: 6961

DSM-Number: 7056

keywords: genome sequence, 16S sequence, Archaea, anaerobe, mesophilic

description: Methanobrevibacter arboriphilus SA is an anaerobe, mesophilic archaeon that was isolated from paddy field soil.

NCBI tax id

NCBI tax idMatching level
1293039strain
39441species

strain history

@refhistory
2962<- S. Asakawa, SA
67770S. Asakawa SA.

doi: 10.13145/bacdive6961.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Methanobacteria
  • order: Methanobacteriales
  • family: Methanobacteriaceae
  • genus: Methanobrevibacter
  • species: Methanobrevibacter arboriphilus
  • full scientific name: Methanobrevibacter arboriphilus corrig. (Zeikus and Henning 1975) Balch and Wolfe 1981

  • synonyms

    @refsynonym
    20215Methanobacterium arbophilicum
    20215Methanobrevibacter arboriphilicus

@ref: 2962

domain: Archaea

phylum: Euryarchaeota

class: Methanobacteria

order: Methanobacteriales

family: Methanobacteriaceae

genus: Methanobrevibacter

species: Methanobrevibacter arboriphilus

full scientific name: Methanobrevibacter arboriphilus (Zeikus and Henning 1975) Balch and Wolfe 1981

strain designation: SA

type strain: no

Culture and growth conditions

culture medium

  • @ref: 2962
  • name: METHANOBACTERIUM MEDIUM (DSMZ Medium 119)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/119
  • composition: Name: METHANOBACTERIUM MEDIUM (DSMZ Medium 119) Composition: NaHCO3 3.98804 g/l Na-formate 1.99402 g/l Na-acetate 0.997009 g/l Na2S x 9 H2O 0.498504 g/l L-Cysteine HCl x H2O 0.498504 g/l KH2PO4 0.498504 g/l NH4Cl 0.398804 g/l NaCl 0.398804 g/l MgSO4 x 7 H2O 0.398804 g/l Yeast extract 0.199402 g/l CaCl2 x 2 H2O 0.0498504 g/l HCl 0.00249252 g/l FeSO4 x 7 H2O 0.00199402 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l H3BO3 5.98205e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Isobutyric acid DL-2-Methylbutyric acid Valeric acid Isovaleric acid H2SO4 Sludge Distilled water

culture temp

@refgrowthtypetemperaturerange
2962positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 2962
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
2962paddy field soilJapanJPNAsia
67770Paddy field soil in ChikugoJapanJPNAsiaFukuoka

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Field
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)
#Condition#Anoxic (anaerobic)
#Condition#Humid

Safety information

risk assessment

  • @ref: 2962
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Methanobrevibacter arboriphilus gene for 16S rRNA
  • accession: AB065294
  • length: 1441
  • database: ena
  • NCBI tax ID: 39441

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Methanobrevibacter arboriphilus SAGCA_019669925completencbi39441
66792Methanobrevibacter arboriphilus JCM 9315GCA_001315885contigncbi1293039
66792Methanobrevibacter arboriphilus JCM 93152681813027draftimg1293039
66792Methanobrevibacter arboriphilus strain SA39441.6completepatric39441
66792Methanobrevibacter arboriphilus JCM 93151293039.3wgspatric1293039

GC content

  • @ref: 2962
  • GC-content: 26.4

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno96.673no
gram-positiveno94.27no
anaerobicyes98.351yes
aerobicno93.958yes
halophileno84.355no
spore-formingno93.981no
motileno91.399no
thermophileno98.179yes
glucose-utilyes65.407no
glucose-fermentno63.415no

External links

@ref: 2962

culture collection no.: DSM 7056, JCM 9315

straininfo link

  • @ref: 76423
  • straininfo: 276632

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2962Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7056)https://www.dsmz.de/collection/catalogue/details/culture/DSM-7056
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
76423Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID276632.1StrainInfo: A central database for resolving microbial strain identifiers