Strain identifier
BacDive ID: 696
Type strain: 
Species: Bacillus licheniformis
Strain Designation: SUD K3
Strain history: <- E. S. Dawood; SUD K3
NCBI tax ID(s): 1402 (species)
version 9.3 (current version)
General
@ref: 4266
BacDive-ID: 696
DSM-Number: 11259
keywords: genome sequence, Bacteria, spore-forming, mesophilic
description: Bacillus licheniformis SUD K3 is a spore-forming, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1402
- Matching level: species
strain history
- @ref: 4266
- history: <- E. S. Dawood; SUD K3
doi: 10.13145/bacdive696.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus licheniformis
- full scientific name: Bacillus licheniformis (Weigmann 1898) Chester 1901 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Clostridium licheniforme
@ref: 4266
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus licheniformis
full scientific name: Bacillus licheniformis (Weigmann 1898) Chester 1901
strain designation: SUD K3
type strain: no
Culture and growth conditions
culture medium
- @ref: 4266
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 4266
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
spore formation
- @ref: 125438
- spore formation: yes
- confidence: 93.806
Isolation, sampling and environmental information
isolation
- @ref: 4266
- sample type: soil
- country: Sudan
- origin.country: SDN
- continent: Africa
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 4266
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bacillus paralicheniformis DSM 11259 | GCA_007994265 | scaffold | ncbi | 1648923 |
| 66792 | Bacillus paralicheniformis strain DSM 11259 | 1648923.101 | wgs | patric | 1648923 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 79.092 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.581 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 51.758 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 93.806 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 93.438 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 86.881 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 75.2 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 63.6 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | variable | 66.3 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 67.6 |
External links
@ref: 4266
culture collection no.: DSM 11259
straininfo link
- @ref: 70371
- straininfo: 400816
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4266 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11259) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11259 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 70371 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID400816.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |