Strain identifier
BacDive ID: 6959
Type strain:
Species: Methanobrevibacter arboriphilus
Strain Designation: DC
Strain history: <- R.S. Wolfe and W.E. Balch, DC (Methanobacterium sp.) <- D. Castignetti
NCBI tax ID(s): 39441 (species)
General
@ref: 813
BacDive-ID: 6959
DSM-Number: 1536
keywords: 16S sequence, Archaea, anaerobe, mesophilic
description: Methanobrevibacter arboriphilus DC is an anaerobe, mesophilic archaeon that was isolated from soil.
NCBI tax id
- NCBI tax id: 39441
- Matching level: species
strain history
- @ref: 813
- history: <- R.S. Wolfe and W.E. Balch, DC (Methanobacterium sp.) <- D. Castignetti
doi: 10.13145/bacdive6959.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Methanobacteria
- order: Methanobacteriales
- family: Methanobacteriaceae
- genus: Methanobrevibacter
- species: Methanobrevibacter arboriphilus
- full scientific name: Methanobrevibacter arboriphilus corrig. (Zeikus and Henning 1975) Balch and Wolfe 1981
synonyms
@ref synonym 20215 Methanobacterium arbophilicum 20215 Methanobrevibacter arboriphilicus
@ref: 813
domain: Archaea
phylum: Euryarchaeota
class: Methanobacteria
order: Methanobacteriales
family: Methanobacteriaceae
genus: Methanobrevibacter
species: Methanobrevibacter arboriphilus
full scientific name: Methanobrevibacter arboriphilus (Zeikus and Henning 1975) Balch and Wolfe 1981
strain designation: DC
type strain: no
Culture and growth conditions
culture medium
- @ref: 813
- name: METHANOBACTERIUM MEDIUM (DSMZ Medium 119)
- growth: yes
- link: https://mediadive.dsmz.de/medium/119
- composition: Name: METHANOBACTERIUM MEDIUM (DSMZ Medium 119) Composition: NaHCO3 3.98804 g/l Na-formate 1.99402 g/l Na-acetate 0.997009 g/l Na2S x 9 H2O 0.498504 g/l L-Cysteine HCl x H2O 0.498504 g/l KH2PO4 0.498504 g/l NH4Cl 0.398804 g/l NaCl 0.398804 g/l MgSO4 x 7 H2O 0.398804 g/l Yeast extract 0.199402 g/l CaCl2 x 2 H2O 0.0498504 g/l HCl 0.00249252 g/l FeSO4 x 7 H2O 0.00199402 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l H3BO3 5.98205e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Isobutyric acid DL-2-Methylbutyric acid Valeric acid Isovaleric acid H2SO4 Sludge Distilled water
culture temp
- @ref: 813
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 813
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 813
- sample type: soil
- geographic location: Colorado
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 813
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Methanobrevibacter arboriphilus strain DC 16S ribosomal RNA gene, partial sequence
- accession: JQ346749
- length: 1270
- database: ena
- NCBI tax ID: 39441
GC content
- @ref: 813
- GC-content: 27.7
External links
@ref: 813
culture collection no.: DSM 1536
straininfo link
- @ref: 76421
- straininfo: 47449
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
813 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1536) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1536 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
76421 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47449.1 | StrainInfo: A central database for resolving microbial strain identifiers |