Strain identifier
BacDive ID: 6948
Type strain: 
Species: Methanobacterium aarhusense
Strain Designation: H2-LR
Strain history: <- A. G. Shlimon, University of Aarhus, Department of Microbiology, Institute of Biological Sciences, Denmark; H2-LR <- A. G. Shlimon {2001}
NCBI tax ID(s): 256826 (species)
version 8.1 (current version)
General
@ref: 5763
BacDive-ID: 6948
DSM-Number: 15219
keywords: 16S sequence, Archaea, anaerobe, thermophilic
description: Methanobacterium aarhusense H2-LR is an anaerobe, thermophilic archaeon that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 256826
- Matching level: species
strain history
- @ref: 5763
- history: <- A. G. Shlimon, University of Aarhus, Department of Microbiology, Institute of Biological Sciences, Denmark; H2-LR <- A. G. Shlimon {2001}
doi: 10.13145/bacdive6948.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Methanobacteria
- order: Methanobacteriales
- family: Methanobacteriaceae
- genus: Methanobacterium
- species: Methanobacterium aarhusense
- full scientific name: Methanobacterium aarhusense Shlimon et al. 2004
@ref: 5763
domain: Archaea
phylum: Euryarchaeota
class: Methanobacteria
order: Methanobacteriales
family: Methanobacteriaceae
genus: Methanobacterium
species: Methanobacterium aarhusense
full scientific name: Methanobacterium aarhusense Shlimon et al. 2004
strain designation: H2-LR
type strain: yes
Morphology
colony morphology
- @ref: 5763
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 5763
- name: METHANOGENIUM MEDIUM (H2/CO2) (DSMZ Medium 141)
- growth: yes
- link: https://mediadive.dsmz.de/medium/141
- composition: Name: METHANOGENIUM MEDIUM (H2/CO2) (DSMZ Medium 141) Composition: NaHCO3 4.89237 g/l MgCl2 x 6 H2O 3.91389 g/l Yeast extract 1.95695 g/l Trypticase peptone 1.95695 g/l Na-acetate 0.978474 g/l Na2S x 9 H2O 0.489237 g/l L-Cysteine HCl x H2O 0.489237 g/l KCl 0.332681 g/l NH4Cl 0.244618 g/l K2HPO4 0.136986 g/l MgSO4 x 7 H2O 0.0293542 g/l Nitrilotriacetic acid 0.0146771 g/l NaCl 0.00978474 g/l MnSO4 x H2O 0.00489237 g/l Fe(NH4)2(SO4)2 x 6 H2O 0.00195695 g/l CoSO4 x 7 H2O 0.00176125 g/l ZnSO4 x 7 H2O 0.00176125 g/l FeSO4 x 7 H2O 0.000978474 g/l CaCl2 x 2 H2O 0.000978474 g/l Sodium resazurin 0.000489237 g/l NiCl2 x 6 H2O 0.000293542 g/l AlK(SO4)2 x 12 H2O 0.000195695 g/l CuSO4 x 5 H2O 9.78474e-05 g/l Pyridoxine hydrochloride 9.78474e-05 g/l Na2MoO4 x 2 H2O 9.78474e-05 g/l H3BO3 9.78474e-05 g/l Nicotinic acid 4.89237e-05 g/l Riboflavin 4.89237e-05 g/l (DL)-alpha-Lipoic acid 4.89237e-05 g/l Thiamine HCl 4.89237e-05 g/l Calcium D-(+)-pantothenate 4.89237e-05 g/l p-Aminobenzoic acid 4.89237e-05 g/l Folic acid 1.95695e-05 g/l Biotin 1.95695e-05 g/l Na2WO4 x 2 H2O 3.91389e-06 g/l Na2SeO3 x 5 H2O 2.93542e-06 g/l Vitamin B12 9.78474e-07 g/l Distilled water
culture temp
- @ref: 5763
- growth: positive
- type: growth
- temperature: 40
- range: thermophilic
Physiology and metabolism
oxygen tolerance
- @ref: 5763
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 5763
- sample type: marine sediment
- geographic location: Arhus Bay
- country: Denmark
- origin.country: DNK
- continent: Europe
- latitude: 56.1556
- longitude: 10.3233
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_190297.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17808;96_69725;97_90544;98_123061;99_190297&stattab=map
- Last taxonomy: Methanobacterium aarhusense subclade
- 16S sequence: AY386124
- Sequence Identity:
- Total samples: 269
- soil counts: 18
- aquatic counts: 227
- animal counts: 13
- plant counts: 11
Safety information
risk assessment
- @ref: 5763
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5763
- description: Methanobacterium aarhusense 16S ribosomal RNA gene, partial sequence
- accession: AY386124
- length: 1333
- database: ena
- NCBI tax ID: 256826
GC content
- @ref: 5763
- GC-content: 34.9
External links
@ref: 5763
culture collection no.: DSM 15219, ATCC BAA 828, NBRC 105225
straininfo link
- @ref: 76410
- straininfo: 132021
literature
- topic: Phylogeny
- Pubmed-ID: 15143021
- title: Methanobacterium aarhusense sp. nov., a novel methanogen isolated from a marine sediment (Aarhus Bay, Denmark).
- authors: Shlimon AG, Friedrich MW, Niemann H, Ramsing NB, Finster K
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.02994-0
- year: 2004
- mesh: Base Composition, Base Sequence, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Denmark, Geologic Sediments/microbiology, Methane/metabolism, Methanobacterium/*classification/genetics/*isolation & purification/metabolism, Microscopy, Electron, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5763 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15219) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15219 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 76410 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID132021.1 | StrainInfo: A central database for resolving microbial strain identifiers |