Strain identifier

BacDive ID: 6940

Type strain: Yes

Species: Methanobacterium thermaggregans

Strain history: <- K. H. Blotevogel (Methanobacterium thermoaggregans)

NCBI tax ID(s): 83982 (species)

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General

@ref: 1335

BacDive-ID: 6940

DSM-Number: 3266

keywords: 16S sequence, Archaea, anaerobe, thermophilic

description: Methanobacterium thermaggregans DSM 3266 is an anaerobe, thermophilic archaeon that was isolated from mud from cattle pasture.

NCBI tax id

  • NCBI tax id: 83982
  • Matching level: species

strain history

  • @ref: 1335
  • history: <- K. H. Blotevogel (Methanobacterium thermoaggregans)

doi: 10.13145/bacdive6940.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Methanobacteria
  • order: Methanobacteriales
  • family: Methanobacteriaceae
  • genus: Methanobacterium
  • species: Methanobacterium thermaggregans
  • full scientific name: Methanobacterium thermaggregans corrig. Blotevogel and Fischer 1988

  • synonyms

    • @ref: 20215
    • synonym: Methanobacterium thermoaggregans

@ref: 1335

domain: Archaea

phylum: Euryarchaeota

class: Methanobacteria

order: Methanobacteriales

family: Methanobacteriaceae

genus: Methanobacterium

species: Methanobacterium thermaggregans

full scientific name: Methanobacterium thermaggregans Blotevogel and Fischer 1988

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 1335
  • name: METHANOBACTERIUM MEDIUM (DSMZ Medium 119)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/119
  • composition: Name: METHANOBACTERIUM MEDIUM (DSMZ Medium 119) Composition: NaHCO3 3.98804 g/l Na-formate 1.99402 g/l Na-acetate 0.997009 g/l Na2S x 9 H2O 0.498504 g/l L-Cysteine HCl x H2O 0.498504 g/l KH2PO4 0.498504 g/l NH4Cl 0.398804 g/l NaCl 0.398804 g/l MgSO4 x 7 H2O 0.398804 g/l Yeast extract 0.199402 g/l CaCl2 x 2 H2O 0.0498504 g/l HCl 0.00249252 g/l FeSO4 x 7 H2O 0.00199402 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l H3BO3 5.98205e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Isobutyric acid DL-2-Methylbutyric acid Valeric acid Isovaleric acid H2SO4 Sludge Distilled water

culture temp

  • @ref: 1335
  • growth: positive
  • type: growth
  • temperature: 65
  • range: thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 1335
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 1335
  • sample type: mud from cattle pasture
  • geographic location: Oldenburg
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Grassland
#Environmental#Terrestrial#Mud (Sludge)
#Host#Mammals#Bovinae (Cow, Cattle)

taxonmaps

  • @ref: 69479
  • File name: preview.99_194104.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17808;96_69115;97_89795;98_122107;99_194104&stattab=map
  • Last taxonomy: Methanobacterium thermaggregans
  • 16S sequence: AB679267
  • Sequence Identity:
  • Total samples: 1
  • aquatic counts: 1

Safety information

risk assessment

  • @ref: 1335
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Methanobacterium thermaggregans gene for 16S rRNA gene, partial sequence, strain: DSM 3266AB6792671411ena83982
1335Methanobacterium thermaggregans partial 16S rRNA gene, type strain DSM 3266THE6540051391ena83982

GC content

  • @ref: 1335
  • GC-content: 42.0

External links

@ref: 1335

culture collection no.: DSM 3266, ATCC 43168

straininfo link

  • @ref: 76403
  • straininfo: 41687

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1335Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3266)https://www.dsmz.de/collection/catalogue/details/culture/DSM-3266
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76403Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID41687.1StrainInfo: A central database for resolving microbial strain identifiers