Strain identifier
BacDive ID: 6935
Type strain: 
Species: Methanobacterium palustre
Strain Designation: F
Strain history: <- G. Zellner <- E. Braun <- J. Winter, strain F
NCBI tax ID(s): 2171 (species)
version 8.1 (current version)
General
@ref: 1305
BacDive-ID: 6935
DSM-Number: 3108
keywords: 16S sequence, Archaea, anaerobe, mesophilic
description: Methanobacterium palustre F is an anaerobe, mesophilic archaeon that was isolated from peat bog.
NCBI tax id
- NCBI tax id: 2171
- Matching level: species
strain history
- @ref: 1305
- history: <- G. Zellner <- E. Braun <- J. Winter, strain F
doi: 10.13145/bacdive6935.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Methanobacteria
- order: Methanobacteriales
- family: Methanobacteriaceae
- genus: Methanobacterium
- species: Methanobacterium palustre
- full scientific name: Methanobacterium palustre Zellner et al. 1990
@ref: 1305
domain: Archaea
phylum: Euryarchaeota
class: Methanobacteria
order: Methanobacteriales
family: Methanobacteriaceae
genus: Methanobacterium
species: Methanobacterium palustre
full scientific name: Methanobacterium palustre Zellner et al. 1990
strain designation: F
type strain: yes
Culture and growth conditions
culture medium
- @ref: 1305
- name: METHANOBACTERIUM MEDIUM (DSMZ Medium 119)
- growth: yes
- link: https://mediadive.dsmz.de/medium/119
- composition: Name: METHANOBACTERIUM MEDIUM (DSMZ Medium 119) Composition: NaHCO3 3.98804 g/l Na-formate 1.99402 g/l Na-acetate 0.997009 g/l Na2S x 9 H2O 0.498504 g/l L-Cysteine HCl x H2O 0.498504 g/l KH2PO4 0.498504 g/l NH4Cl 0.398804 g/l NaCl 0.398804 g/l MgSO4 x 7 H2O 0.398804 g/l Yeast extract 0.199402 g/l CaCl2 x 2 H2O 0.0498504 g/l HCl 0.00249252 g/l FeSO4 x 7 H2O 0.00199402 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l H3BO3 5.98205e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Isobutyric acid DL-2-Methylbutyric acid Valeric acid Isovaleric acid H2SO4 Sludge Distilled water
culture temp
- @ref: 1305
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 1305
- oxygen tolerance: anaerobe
compound production
- @ref: 1305
- compound: secondary alcohol dehydrogenase
Isolation, sampling and environmental information
isolation
- @ref: 1305
- sample type: peat bog
- geographic location: Kelheim
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Wetland (Swamp) |
| #Condition | #Acidic |
Safety information
risk assessment
- @ref: 1305
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Methanobacterium palustre 16S small subunit ribosomal RNA gene, partial sequence | AF095263 | 1433 | ena | 2171 |
| 1305 | Methanobacterium palustre 16S ribosomal RNA gene, partial sequence | AF093061 | 1414 | ena | 2171 |
GC content
- @ref: 1305
- GC-content: 34.0
External links
@ref: 1305
culture collection no.: DSM 3108, NBRC 105230
straininfo link
- @ref: 76398
- straininfo: 47699
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1305 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3108) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-3108 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 76398 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47699.1 | StrainInfo: A central database for resolving microbial strain identifiers |