Strain identifier

BacDive ID: 6909

Type strain: No

Species: Methanobacterium bryantii

Strain Designation: RiH2

Strain history: <- J.-L. Garcia; RiH2 <- C. Joulian {1993}

NCBI tax ID(s): 2161 (species)

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General

@ref: 3804

BacDive-ID: 6909

DSM-Number: 10113

keywords: 16S sequence, Archaea, anaerobe, mesophilic

description: Methanobacterium bryantii RiH2 is an anaerobe, mesophilic archaeon that was isolated from ricefield soil.

NCBI tax id

  • NCBI tax id: 2161
  • Matching level: species

strain history

  • @ref: 3804
  • history: <- J.-L. Garcia; RiH2 <- C. Joulian {1993}

doi: 10.13145/bacdive6909.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Methanobacteria
  • order: Methanobacteriales
  • family: Methanobacteriaceae
  • genus: Methanobacterium
  • species: Methanobacterium bryantii
  • full scientific name: Methanobacterium bryantii Balch and Wolfe 1981

@ref: 3804

domain: Archaea

phylum: Euryarchaeota

class: Methanobacteria

order: Methanobacteriales

family: Methanobacteriaceae

genus: Methanobacterium

species: Methanobacterium bryantii

full scientific name: Methanobacterium bryantii Balch and Wolfe 1981 emend. Judicial Commission 1992

strain designation: RiH2

type strain: no

Culture and growth conditions

culture medium

  • @ref: 3804
  • name: METHANOBACTERIUM II MEDIUM (DSMZ Medium 825)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/825
  • composition: Name: METHANOBACTERIUM II MEDIUM (DSMZ Medium 825) Composition: NaHCO3 3.95648 g/l NH4Cl 0.98912 g/l Yeast extract 0.98912 g/l Na2S x 9 H2O 0.49456 g/l Na-acetate 0.49456 g/l L-Cysteine HCl x H2O 0.49456 g/l K2HPO4 0.296736 g/l KH2PO4 0.296736 g/l MgCl2 x 6 H2O 0.197824 g/l KCl 0.098912 g/l MgSO4 x 7 H2O 0.0296736 g/l Nitrilotriacetic acid 0.0148368 g/l NaCl 0.0098912 g/l MnSO4 x H2O 0.0049456 g/l CoSO4 x 7 H2O 0.00178042 g/l ZnSO4 x 7 H2O 0.00178042 g/l FeSO4 x 7 H2O 0.00098912 g/l CaCl2 x 2 H2O 0.00098912 g/l Sodium resazurin 0.00049456 g/l NiCl2 x 6 H2O 0.000296736 g/l AlK(SO4)2 x 12 H2O 0.000197824 g/l Na2MoO4 x 2 H2O 9.8912e-05 g/l Pyridoxine hydrochloride 9.8912e-05 g/l CuSO4 x 5 H2O 9.8912e-05 g/l H3BO3 9.8912e-05 g/l Calcium D-(+)-pantothenate 4.9456e-05 g/l Nicotinic acid 4.9456e-05 g/l Riboflavin 4.9456e-05 g/l (DL)-alpha-Lipoic acid 4.9456e-05 g/l p-Aminobenzoic acid 4.9456e-05 g/l Thiamine HCl 4.9456e-05 g/l Folic acid 1.97824e-05 g/l Biotin 1.97824e-05 g/l Na2WO4 x 2 H2O 3.95648e-06 g/l Na2SeO3 x 5 H2O 2.96736e-06 g/l Vitamin B12 9.8912e-07 g/l Distilled water

culture temp

  • @ref: 3804
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 3804
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 3804
  • sample type: ricefield soil
  • geographic location: Camargue
  • country: France
  • origin.country: FRA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Field
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_187129.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17808;96_68811;97_89453;98_121726;99_187129&stattab=map
  • Last taxonomy: Methanobacterium
  • 16S sequence: AF028688
  • Sequence Identity:
  • Total samples: 247
  • soil counts: 80
  • aquatic counts: 94
  • animal counts: 15
  • plant counts: 58

Safety information

risk assessment

  • @ref: 3804
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Methanobacterium bryantii strain RiH2 16S ribosomal RNA gene, complete sequence
  • accession: AF028688
  • length: 1476
  • database: ena
  • NCBI tax ID: 2161

External links

@ref: 3804

culture collection no.: DSM 10113

straininfo link

  • @ref: 76373
  • straininfo: 48752

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3804Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10113)https://www.dsmz.de/collection/catalogue/details/culture/DSM-10113
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76373Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID48752.1StrainInfo: A central database for resolving microbial strain identifiers