Strain identifier

BacDive ID: 6897

Type strain: Yes

Species: Methanothermobacter thermoflexus

Strain Designation: IDZ

Strain history: <- S. V. Kotelnikova and A. Ya. Obraztsova, Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Science, Pushchino, Russia; IDZ

NCBI tax ID(s): 49340 (species)

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General

@ref: 3085

BacDive-ID: 6897

DSM-Number: 7268

keywords: 16S sequence, Archaea, anaerobe, thermophilic

description: Methanothermobacter thermoflexus IDZ is an anaerobe, thermophilic archaeon that was isolated from sludge, metacrilic wastes digester.

NCBI tax id

  • NCBI tax id: 49340
  • Matching level: species

strain history

  • @ref: 3085
  • history: <- S. V. Kotelnikova and A. Ya. Obraztsova, Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Science, Pushchino, Russia; IDZ

doi: 10.13145/bacdive6897.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Methanobacteria
  • order: Methanobacteriales
  • family: Methanobacteriaceae
  • genus: Methanothermobacter
  • species: Methanothermobacter thermoflexus
  • full scientific name: Methanothermobacter thermoflexus (Kotelnikova et al. 1994) Boone 2002
  • synonyms

    @refsynonym
    20215Methanothermobacter thermoflexus
    20215Methanobacterium thermoflexum

@ref: 3085

domain: Archaea

phylum: Euryarchaeota

class: Methanobacteria

order: Methanobacteriales

family: Methanobacteriaceae

genus: Methanothermobacter

species: Methanothermobacter thermoflexus

full scientific name: Methanothermobacter thermoflexus (Kotelnikova et al. 1994) Boone 2002

strain designation: IDZ

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 3085
  • name: METHANOGENIUM MEDIUM (H2/CO2) (DSMZ Medium 141)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/141
  • composition: Name: METHANOGENIUM MEDIUM (H2/CO2) (DSMZ Medium 141) Composition: NaHCO3 4.89237 g/l MgCl2 x 6 H2O 3.91389 g/l Yeast extract 1.95695 g/l Trypticase peptone 1.95695 g/l Na-acetate 0.978474 g/l Na2S x 9 H2O 0.489237 g/l L-Cysteine HCl x H2O 0.489237 g/l KCl 0.332681 g/l NH4Cl 0.244618 g/l K2HPO4 0.136986 g/l MgSO4 x 7 H2O 0.0293542 g/l Nitrilotriacetic acid 0.0146771 g/l NaCl 0.00978474 g/l MnSO4 x H2O 0.00489237 g/l Fe(NH4)2(SO4)2 x 6 H2O 0.00195695 g/l CoSO4 x 7 H2O 0.00176125 g/l ZnSO4 x 7 H2O 0.00176125 g/l FeSO4 x 7 H2O 0.000978474 g/l CaCl2 x 2 H2O 0.000978474 g/l Sodium resazurin 0.000489237 g/l NiCl2 x 6 H2O 0.000293542 g/l AlK(SO4)2 x 12 H2O 0.000195695 g/l CuSO4 x 5 H2O 9.78474e-05 g/l Pyridoxine hydrochloride 9.78474e-05 g/l Na2MoO4 x 2 H2O 9.78474e-05 g/l H3BO3 9.78474e-05 g/l Nicotinic acid 4.89237e-05 g/l Riboflavin 4.89237e-05 g/l (DL)-alpha-Lipoic acid 4.89237e-05 g/l Thiamine HCl 4.89237e-05 g/l Calcium D-(+)-pantothenate 4.89237e-05 g/l p-Aminobenzoic acid 4.89237e-05 g/l Folic acid 1.95695e-05 g/l Biotin 1.95695e-05 g/l Na2WO4 x 2 H2O 3.91389e-06 g/l Na2SeO3 x 5 H2O 2.93542e-06 g/l Vitamin B12 9.78474e-07 g/l Distilled water

culture temp

  • @ref: 3085
  • growth: positive
  • type: growth
  • temperature: 55
  • range: thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 3085
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 3085
  • sample type: sludge, metacrilic wastes digester
  • country: Russia
  • origin.country: RUS

isolation source categories

Cat1Cat2Cat3
#Engineered#Biodegradation
#Engineered#Waste
#Environmental#Terrestrial#Mud (Sludge)

taxonmaps

  • @ref: 69479
  • File name: preview.99_188781.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17808;96_68809;97_89451;98_122923;99_188781&stattab=map
  • Last taxonomy: Methanothermobacter thermoflexus
  • 16S sequence: X99047
  • Sequence Identity:
  • Total samples: 15
  • aquatic counts: 14
  • animal counts: 1

Safety information

risk assessment

  • @ref: 3085
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 3085
  • description: M.thermoflexum 16S rRNA gene
  • accession: X99047
  • length: 1454
  • database: ena
  • NCBI tax ID: 49340

GC content

  • @ref: 3085
  • GC-content: 55.1

External links

@ref: 3085

culture collection no.: DSM 7268, ATCC 51444, VKM B-1963

straininfo link

  • @ref: 76361
  • straininfo: 46907

Reference

@idauthorscataloguedoi/urltitle
3085Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7268)https://www.dsmz.de/collection/catalogue/details/culture/DSM-7268
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76361Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID46907.1StrainInfo: A central database for resolving microbial strain identifiers