Strain identifier
BacDive ID: 6882
Type strain:
Species: Methanothermobacter thermautotrophicus
Strain Designation: Delta H, DeltaH
Strain history: DSM 1053 <-- J. G. Zeikus ΔH.
NCBI tax ID(s): 145262 (species)
General
@ref: 387
BacDive-ID: 6882
DSM-Number: 1053
keywords: genome sequence, 16S sequence, Archaea, anaerobe, thermophilic
description: Methanothermobacter thermautotrophicus Delta H is an anaerobe, thermophilic archaeon that was isolated from sewage sludge.
NCBI tax id
- NCBI tax id: 145262
- Matching level: species
strain history
@ref | history |
---|---|
387 | <- J. G. Zeikus, University of Illinois, Urbana, USA; DeltaH <- J. G. Zeikus {1971} |
67770 | DSM 1053 <-- J. G. Zeikus ΔH. |
doi: 10.13145/bacdive6882.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Methanobacteria
- order: Methanobacteriales
- family: Methanobacteriaceae
- genus: Methanothermobacter
- species: Methanothermobacter thermautotrophicus
- full scientific name: Methanothermobacter thermautotrophicus corrig. (Zeikus and Wolfe 1972) Wasserfallen et al. 2000
synonyms
@ref synonym 20215 Methanobacterium thermautotrophicum 20215 Methanobacterium thermalcaliphilum 20215 Methanobacterium thermoautotrophicus 20215 Methanobacterium thermoalcaliphilum 20215 Methanobacterium thermoformicicum 20215 Methanobacterium thermoautotrophicum
@ref: 387
domain: Archaea
phylum: Euryarchaeota
class: Methanobacteria
order: Methanobacteriales
family: Methanobacteriaceae
genus: Methanothermobacter
species: Methanothermobacter thermautotrophicus
full scientific name: Methanothermobacter thermautotrophicus (Zeikus and Wolfe 1972) Wasserfallen et al. 2000
strain designation: Delta H, DeltaH
type strain: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
387 | MODIFIED METHANOBACTERIUM MEDIUM (DSMZ Medium 1523) | yes | https://mediadive.dsmz.de/medium/1523 | Name: MODIFIED METHANOBACTERIUM MEDIUM (DSMZ Medium 1523) Composition: Brain heart infusion 5.98802 g/l Proteose peptone 5.98802 g/l NaHCO3 3.99202 g/l Yeast extract 1.99601 g/l Na-formate 1.99601 g/l Na-acetate 0.998004 g/l Na2S x 9 H2O 0.499002 g/l KH2PO4 0.499002 g/l L-Cysteine HCl x H2O 0.499002 g/l MgSO4 x 7 H2O 0.399202 g/l NH4Cl 0.399202 g/l NaCl 0.399202 g/l CaCl2 x 2 H2O 0.0499002 g/l HCl 0.00249501 g/l FeCl2 x 4 H2O 0.00149701 g/l Sodium resazurin 0.000499002 g/l Pyridoxine hydrochloride 0.000299401 g/l Thiamine-HCl x 2 H2O 0.000199601 g/l Nicotinic acid 0.000199601 g/l CoCl2 x 6 H2O 0.000189621 g/l Calcium pantothenate 9.98004e-05 g/l Vitamin B12 9.98004e-05 g/l MnCl2 x 4 H2O 9.98004e-05 g/l p-Aminobenzoic acid 7.98403e-05 g/l ZnCl2 6.98603e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l D-(+)-biotin 1.99601e-05 g/l H3BO3 5.98802e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Distilled water |
387 | METHANOBACTERIUM MEDIUM (DSMZ Medium 119) | yes | https://mediadive.dsmz.de/medium/119 | Name: METHANOBACTERIUM MEDIUM (DSMZ Medium 119) Composition: NaHCO3 3.98804 g/l Na-formate 1.99402 g/l Na-acetate 0.997009 g/l Na2S x 9 H2O 0.498504 g/l L-Cysteine HCl x H2O 0.498504 g/l KH2PO4 0.498504 g/l NH4Cl 0.398804 g/l NaCl 0.398804 g/l MgSO4 x 7 H2O 0.398804 g/l Yeast extract 0.199402 g/l CaCl2 x 2 H2O 0.0498504 g/l HCl 0.00249252 g/l FeSO4 x 7 H2O 0.00199402 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l H3BO3 5.98205e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Isobutyric acid DL-2-Methylbutyric acid Valeric acid Isovaleric acid H2SO4 Sludge Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
387 | positive | growth | 65 | thermophilic |
67770 | positive | growth | 65 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 387
- oxygen tolerance: anaerobe
compound production
@ref | compound |
---|---|
387 | 7,8 didemethyl-8-hydroxy-5-deazariboflavin |
387 | coenzyme F420 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
387 | sewage sludge | Illinois, Urbana | USA | USA | North America |
67770 | Anaerobic sewage-sludge |
isolation source categories
- Cat1: #Engineered
- Cat2: #Waste
- Cat3: #Sewage sludge
Safety information
risk assessment
- @ref: 387
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
67770 | M.thermoautotrophicum 5S ribosomal RNA | X62857 | 123 | ena | 145262 |
67770 | M.thermoautotrophicum (DELTA H) gene for 16S rRNA | X68720 | 1334 | ena | 145262 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Methanothermobacter thermautotrophicus str. Delta H | GCA_000008645 | complete | ncbi | 187420 |
66792 | Methanothermobacter thermautotrophicus Delta H | 638154510 | complete | img | 187420 |
66792 | Methanothermobacter thermautotrophicus str. Delta H | 187420.15 | complete | patric | 187420 |
66792 | Methanothermobacter thermautotrophicus Delta H | GCA_027554905 | complete | ncbi | 145262 |
GC content
@ref | GC-content | method |
---|---|---|
387 | 49.7 | |
387 | 48.6 | |
67770 | 52 | Buoyant density centrifugation (BD) |
67770 | 49.7 | Buoyant density centrifugation (BD) |
67770 | 50.7 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 84.854 | no |
flagellated | no | 96.206 | no |
gram-positive | no | 97.348 | no |
anaerobic | yes | 98.682 | yes |
halophile | no | 84.913 | no |
spore-forming | no | 96.645 | no |
glucose-util | yes | 73.478 | no |
aerobic | no | 96.508 | no |
thermophile | yes | 90.251 | yes |
glucose-ferment | no | 63.601 | no |
External links
@ref: 387
culture collection no.: DSM 1053, ATCC 29096, JCM 10044, NBRC 100330, OCM 143, VKM B-1908
straininfo link
- @ref: 76346
- straininfo: 47306
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 1380288 | DNA relatedness among some thermophilic members of the genus Methanobacterium: emendation of the species Methanobacterium thermoautotrophicum and rejection of Methanobacterium thermoformicicum as a synonym of Methanobacterium thermoautotrophicum. | Touzel JP, Conway de Macario E, Nolling J, De Vos WM, Zhilina T, Lysenko AM | Int J Syst Bacteriol | 10.1099/00207713-42-3-408 | 1992 | Antigens, Bacterial/immunology, Base Composition, Base Sequence, Cross Reactions, DNA, Bacterial/*chemistry, Methanobacterium/*classification/genetics/immunology, Molecular Sequence Data, Nucleic Acid Hybridization, RNA, Bacterial/chemistry, RNA, Ribosomal, 5S/chemistry, Sequence Homology, Nucleic Acid | Genetics |
Enzymology | 6300837 | Paramagnetic centers in the nickel-containing, deazaflavin-reducing hydrogenase from Methanobacterium thermoautotrophicum. | Kojima N, Fox JA, Hausinger RP, Daniels L, Orme-Johnson WH, Walsh C | Proc Natl Acad Sci U S A | 10.1073/pnas.80.2.378 | 1983 | Coenzymes, Electron Spin Resonance Spectroscopy, Euryarchaeota/*enzymology, Flavins, Hydrogenase, Kinetics, Nickel/*analysis, Oxidation-Reduction, Oxidoreductases/*metabolism, *Riboflavin/*analogs & derivatives | Metabolism |
Enzymology | 6314095 | A plasmid in the archaebacterium Methanobacterium thermoautotrophicum. | Meile L, Kiener A, Leisinger T | Mol Gen Genet | 10.1007/BF00425766 | 1983 | DNA Restriction Enzymes, DNA, Bacterial/genetics, Euryarchaeota/*genetics, *Plasmids | |
Enzymology | 7400098 | Microbiology of methanogenesis in thermal, volcanic environments. | Zeikus JG, Ben-Bassat A, Hegge PW | J Bacteriol | 10.1128/jb.143.1.432-440.1980 | 1980 | Anaerobiosis, Bacteria/isolation & purification, Clostridium/isolation & purification, Euryarchaeota/cytology/isolation & purification/*metabolism, Hot Temperature, Hydrogen/metabolism, Methane/*biosynthesis, *Water Microbiology, Wyoming | Phylogeny |
Enzymology | 9478969 | Purification, regulation, and molecular and biochemical characterization of pyruvate carboxylase from Methanobacterium thermoautotrophicum strain deltaH. | Mukhopadhyay B, Stoddard SF, Wolfe RS | J Biol Chem | 10.1074/jbc.273.9.5155 | 1998 | Amino Acid Sequence, Bacterial Proteins/genetics, Base Sequence, Binding Sites, Biotinylation, Carbon-Nitrogen Ligases/genetics, Cloning, Molecular, *Escherichia coli Proteins, *Gene Expression Regulation, Archaeal, *Gene Expression Regulation, Enzymologic, Genes, Archaeal, Methanobacterium/*enzymology/genetics, Molecular Sequence Data, Pyruvate Carboxylase/*genetics/isolation & purification/*metabolism, *Repressor Proteins, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Species Specificity, Substrate Specificity, *Transcription Factors | Phylogeny |
Metabolism | 9565696 | Methanopterin biosynthesis: methylation of the biosynthetic intermediates. | White RH | Biochim Biophys Acta | 10.1016/s0304-4165(97)00148-7 | 1998 | Azo Compounds/chemistry/metabolism, Binding Sites, Glutarates/metabolism, Methanobacterium/chemistry/metabolism, Methylation, Phosphorylation, Pterins/analysis/chemistry/*metabolism, Species Specificity, Subcellular Fractions/chemistry/metabolism, Tritium | Phylogeny |
Phylogeny | 9573152 | Isolation and characterization of Methanobacterium thermoautotrophicum DeltaH mutants unable to grow under hydrogen-deprived conditions. | Pennings JL, Keltjens JT, Vogels GD | J Bacteriol | 10.1128/JB.180.10.2676-2681.1998 | 1998 | Adenosine Monophosphate/analogs & derivatives/analysis, Bacterial Proteins/*metabolism, Colony Count, Microbial, Flavins, Hydrogen/physiology, Methanobacterium/enzymology/growth & development/*isolation & purification, Mutagenesis, RNA, Messenger/*metabolism, Riboflavin/analogs & derivatives/analysis | Metabolism |
Enzymology | 9639601 | Two malate dehydrogenases in Methanobacterium thermoautotrophicum. | Thompson H, Tersteegen A, Thauer RK, Hedderich R | Arch Microbiol | 10.1007/s002030050612 | 1998 | Acetates/metabolism, Amino Acid Sequence, Archaeal Proteins/classification/*genetics/isolation & purification/metabolism, Bacillus subtilis/genetics, Electrophoresis, Polyacrylamide Gel, Euryarchaeota/*enzymology/genetics, Malate Dehydrogenase/classification/*genetics/isolation & purification/metabolism, Malates/metabolism, Molecular Sequence Data, NAD/metabolism, NADP/metabolism, Phylogeny, Sequence Alignment | Metabolism |
Metabolism | 10400604 | Methanobacterium thermoautotrophicum RNA polymerase and transcription in vitro. | Darcy TJ, Hausner W, Awery DE, Edwards AM, Thomm M, Reeve JN | J Bacteriol | 10.1128/JB.181.14.4424-4429.1999 | 1999 | Amino Acid Sequence, *Archaeal Proteins, Centrifugation, Density Gradient, DNA-Binding Proteins/genetics/metabolism, DNA-Directed RNA Polymerases/*genetics/isolation & purification/*metabolism, Electrophoresis, Polyacrylamide Gel, *Gene Expression Regulation, Archaeal, Hydrogen/metabolism, Methane/metabolism, Methanobacterium/enzymology/*genetics/metabolism, Molecular Sequence Data, Nuclear Proteins/genetics/metabolism, Precipitin Tests, TATA-Box Binding Protein, *Transcription Factor TFIIB, Transcription Factors/genetics/metabolism, *Transcription, Genetic | Enzymology |
Enzymology | 10497247 | Isolation and characterization of a split B-type DNA polymerase from the archaeon Methanobacterium thermoautotrophicum deltaH. | Kelman Z, Pietrokovski S, Hurwitz J | J Biol Chem | 10.1074/jbc.274.40.28751 | 1999 | Amino Acid Sequence, Base Sequence, Chromatography, Affinity, Cloning, Molecular, DNA Polymerase beta/genetics/*isolation & purification/metabolism, DNA Replication, DNA-Binding Proteins/metabolism, Electrophoresis, Polyacrylamide Gel, Methanobacterium/*enzymology/genetics, Molecular Sequence Data, Oligonucleotides, Recombinant Proteins/genetics/isolation & purification/metabolism | Genetics |
Enzymology | 10515911 | A plant-type (beta-class) carbonic anhydrase in the thermophilic methanoarchaeon Methanobacterium thermoautotrophicum. | Smith KS, Ferry JG | J Bacteriol | 10.1128/JB.181.20.6247-6253.1999 | 1999 | Amino Acid Sequence, Archaeal Proteins/*classification/genetics/isolation & purification, Carbon Dioxide/metabolism, Carbonic Anhydrase Inhibitors, Carbonic Anhydrases/*classification/genetics/isolation & purification, Enzyme Stability, Escherichia coli/genetics, Hot Temperature, Methanobacterium/*enzymology/genetics, Molecular Sequence Data, Plant Proteins/genetics, Recombinant Proteins/classification/isolation & purification, Sequence Homology, Amino Acid, Water/metabolism | Phylogeny |
Metabolism | 10611290 | The single minichromosome maintenance protein of Methanobacterium thermoautotrophicum DeltaH contains DNA helicase activity. | Kelman Z, Lee JK, Hurwitz J | Proc Natl Acad Sci U S A | 10.1073/pnas.96.26.14783 | 1999 | Adenosine Triphosphatases/metabolism, Adenosine Triphosphate/metabolism, Archaeal Proteins/*metabolism, Cell Cycle Proteins, Chromosomal Proteins, Non-Histone, Chromosomes, Archaeal/metabolism, DNA Helicases/*metabolism, DNA Replication, DNA, Archaeal/metabolism, DNA, Single-Stranded, DNA-Binding Proteins, Eukaryotic Cells/enzymology, Methanobacterium/*enzymology, Minichromosome Maintenance Complex Component 4, Minichromosome Maintenance Complex Component 6, Minichromosome Maintenance Complex Component 7, Nuclear Proteins, Protein Conformation, *Saccharomyces cerevisiae Proteins | Genetics |
Genetics | 10702304 | A unique organization of the protein subunits of the DNA polymerase clamp loader in the archaeon Methanobacterium thermoautotrophicum deltaH. | Kelman Z, Hurwitz J | J Biol Chem | 10.1074/jbc.275.10.7327 | 2000 | Adenosine Triphosphatases/metabolism, Amino Acid Sequence, DNA/biosynthesis, *DNA Replication, DNA-Binding Proteins/*genetics/isolation & purification/physiology, DNA-Directed DNA Polymerase/*chemistry/genetics, *Homeodomain Proteins, Methanobacterium/*genetics, Minor Histocompatibility Antigens, Molecular Sequence Data, Proliferating Cell Nuclear Antigen/*genetics/isolation & purification, *Proto-Oncogene Proteins c-bcl-2, Recombinant Proteins/isolation & purification, Replication Protein C, *Repressor Proteins, *Saccharomyces cerevisiae Proteins | Enzymology |
Enzymology | 10894731 | Identification of an alternative nucleoside triphosphate: 5'-deoxyadenosylcobinamide phosphate nucleotidyltransferase in Methanobacterium thermoautotrophicum delta H. | Thomas MG, Escalante-Semerena JC | J Bacteriol | 10.1128/JB.182.15.4227-4233.2000 | 2000 | Amino Acid Sequence, *Archaeal Proteins, Catalysis, Cobamides/biosynthesis/metabolism, Electrophoresis, Polyacrylamide Gel, Gene Library, Guanosine Diphosphate/analogs & derivatives/metabolism, Methanobacterium/*enzymology, Molecular Sequence Data, *Multienzyme Complexes, Nucleotidyltransferases/chemistry/*isolation & purification/metabolism, Open Reading Frames, Pentosyltransferases/genetics/*metabolism, Salmonella enterica/enzymology | Metabolism |
Metabolism | 11053387 | A DNA ligase from a hyperthermophilic archaeon with unique cofactor specificity. | Nakatani M, Ezaki S, Atomi H, Imanaka T | J Bacteriol | 10.1128/JB.182.22.6424-6433.2000 | 2000 | Adenosine Triphosphate/metabolism, Amino Acid Sequence, Archaeal Proteins/chemistry/*genetics/metabolism, Cations, Divalent, Cloning, Molecular, DNA Ligases/chemistry/*genetics/metabolism, Hydrogen-Ion Concentration, Magnesium/metabolism, Molecular Sequence Data, NAD+ Nucleosidase/metabolism, Phylogeny, Sequence Alignment, Temperature, Thermococcus/enzymology/*genetics | Enzymology |
Metabolism | 11292347 | Crystal structure of the MJ0490 gene product of the hyperthermophilic archaebacterium Methanococcus jannaschii, a novel member of the lactate/malate family of dehydrogenases. | Lee BI, Chang C, Cho SJ, Eom SH, Kim KK, Yu YG, Suh SW | J Mol Biol | 10.1006/jmbi.2001.4532 | 2001 | Allosteric Regulation, Amino Acid Sequence, Arginine/metabolism, Binding Sites, Crystallography, X-Ray, Dimerization, Genes, Archaeal/genetics, Glycine/metabolism, Hydrogen Bonding, L-Lactate Dehydrogenase/*chemistry/classification/genetics/metabolism, Malate Dehydrogenase/*chemistry/classification/genetics/metabolism, Methanococcus/*enzymology/genetics, Models, Molecular, Molecular Sequence Data, NAD/metabolism, NADP/metabolism, Protein Folding, Protein Structure, Quaternary, Protein Subunits, Sequence Alignment, Substrate Specificity | Enzymology |
Metabolism | 11576687 | Convenient fluorescence-based methods to measure membrane potential and intracellular pH in the Archaeon Methanobacterium thermoautotrophicum. | de Poorter LM, Keltjens JT | J Microbiol Methods | 10.1016/s0167-7012(01)00312-8 | 2001 | Barbiturates/metabolism, Calibration, Culture Media, Cytoplasm/metabolism, Fluorescence, Hydrogen-Ion Concentration, Isoxazoles/metabolism, *Membrane Potentials, Methanobacterium/cytology/*physiology, Proton-Motive Force/physiology, Riboflavin/*analogs & derivatives/*metabolism, Spectrometry, Fluorescence/*methods | Cultivation |
Metabolism | 11606589 | The zinc finger domain of the archaeal minichromosome maintenance protein is required for helicase activity. | Poplawski A, Grabowski B, Long SE, Kelman Z | J Biol Chem | 10.1074/jbc.M108519200 | 2001 | Amino Acid Sequence, Animals, Archaeal Proteins/*chemistry/genetics/*metabolism, DNA/metabolism, DNA Helicases/*chemistry/genetics/*metabolism, DNA-Binding Proteins/genetics/metabolism, Methanobacterium/*enzymology/genetics, Molecular Sequence Data, Mutation, Recombinant Proteins/chemistry/metabolism, Sequence Alignment, *Zinc Fingers | Genetics |
Metabolism | 11872465 | Differential expression of methanogenesis genes of Methanothermobacter thermoautotrophicus (formerly Methanobacterium thermoautotrophicum) in pure culture and in cocultures with fatty acid-oxidizing syntrophs. | Luo HW, Zhang H, Suzuki T, Hattori S, Kamagata Y | Appl Environ Microbiol | 10.1128/AEM.68.3.1173-1179.2002 | 2002 | Acetates/metabolism, Archaeal Proteins/*genetics/*metabolism, Carbon Dioxide/metabolism, Culture Media, Euryarchaeota/growth & development/metabolism, Gene Expression Regulation, Archaeal, Hydrogen/metabolism, Methane/*metabolism, Methanobacteriaceae/enzymology/genetics/*growth & development, Oxidation-Reduction, Transcription, Genetic | Cultivation |
Metabolism | 12486068 | The cobY gene of the archaeon Halobacterium sp. strain NRC-1 is required for de novo cobamide synthesis. | Woodson JD, Peck RF, Krebs MP, Escalante-Semerena JC | J Bacteriol | 10.1128/JB.185.1.311-316.2003 | 2003 | Archaeal Proteins/genetics/metabolism, Cobamides/*biosynthesis, Colony Count, Microbial, Culture Media, Genetic Complementation Test, Halobacterium/*enzymology/genetics/growth & development, Nucleotidyltransferases/*genetics/*metabolism | Cultivation |
Phylogeny | 14529955 | Improved strategy for presumptive identification of methanogens using 16S riboprinting. | Wright AD, Pimm C | J Microbiol Methods | 10.1016/s0167-7012(03)00169-6 | 2003 | Base Sequence, DNA, Archaeal/chemistry/genetics, Methanobacteriales/classification/*genetics, Molecular Sequence Data, Polymerase Chain Reaction, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/chemistry/*genetics, Ribotyping/*methods, Sequence Analysis, DNA | Genetics |
Metabolism | 16332758 | Coaggregation facilitates interspecies hydrogen transfer between Pelotomaculum thermopropionicum and Methanothermobacter thermautotrophicus. | Ishii S, Kosaka T, Hori K, Hotta Y, Watanabe K | Appl Environ Microbiol | 10.1128/AEM.71.12.7838-7845.2005 | 2005 | Clostridium/cytology/growth & development/*metabolism, Fumarates/metabolism, Hydrogen/*metabolism, Kinetics, Methanobacteriaceae/cytology/growth & development/*metabolism, Microscopy, Electron, Scanning, Species Specificity | Enzymology |
16346644 | Comparison of assimilatory organic nitrogen, sulfur, and carbon sources for growth of methanobacterium species. | Bhatnagar L, Jain MK, Aubert JP, Zeikus JG | Appl Environ Microbiol | 10.1128/aem.48.4.785-790.1984 | 1984 | |||
Biotechnology | 16347389 | Production of ethane, ethylene, and acetylene from halogenated hydrocarbons by methanogenic bacteria. | Belay N, Daniels L | Appl Environ Microbiol | 10.1128/aem.53.7.1604-1610.1987 | 1987 | ||
16347656 | Hydrogen partial pressures in a thermophilic acetate-oxidizing methanogenic coculture. | Lee MJ, Zinder SH | Appl Environ Microbiol | 10.1128/aem.54.6.1457-1461.1988 | 1988 | |||
Metabolism | 16348508 | Diversity and population dynamics of methanogenic bacteria in a granular consortium. | Visser FA, van Lier JB, Macario AJ, Conway de Macario E | Appl Environ Microbiol | 10.1128/aem.57.6.1728-1734.1991 | 1991 | Antibodies, Archaeal/metabolism, Antigens, Archaeal/analysis, *Biodiversity, Bioreactors/*microbiology, Colony Count, Microbial, Euryarchaeota/*physiology, Sewage/*microbiology | |
16348632 | Enrichment of Thermophilic Propionate-Oxidizing Bacteria in Syntrophy with Methanobacterium thermoautotrophicum or Methanobacterium thermoformicicum. | Stams AJ, Grolle KC, Frijters CT, Van Lier JB | Appl Environ Microbiol | 10.1128/aem.58.1.346-352.1992 | 1992 | |||
16349232 | Identification, Biosynthesis, and Function of 1,3,4,6-Hexanetetracarboxylic Acid in Methanobacterium thermoautotrophicum DeltaH. | Gorkovenko A, Roberts MF, White RH | Appl Environ Microbiol | 10.1128/aem.60.4.1249-1253.1994 | 1994 | |||
Cultivation | 16640584 | Methanogenesis is Ca2+ dependent in Methanothermobacter thermautotrophicus strain DeltaH. | Vancek M, Vidova M, Majernik AI, Smigan P | FEMS Microbiol Lett | 10.1111/j.1574-6968.2006.00232.x | 2006 | Adenosine Triphosphate/biosynthesis, Biological Transport/physiology, Calcium/antagonists & inhibitors/*physiology, Calcium Channel Blockers/pharmacology, Culture Media, Egtazic Acid/pharmacology, Methane/*biosynthesis, Methanobacteriaceae/drug effects/growth & development/*metabolism, Ruthenium Red/pharmacology | Pathogenicity |
16887685 | Biochemical analysis of neomycin-resistance in the methanoarchaeon Methanothermobacter thermautotrophicus and some implications for energetic processes in this strain. | Majernik A, Cubonova L, Polak P, Smigan P, Greksak M | Anaerobe | 10.1016/S1075-9964(03)00042-8 | 2003 | |||
Metabolism | 18036179 | Comparative transcriptome analysis of responses of Methanothermobacter thermautotrophicus to different environmental stimuli. | Kato S, Kosaka T, Watanabe K | Environ Microbiol | 10.1111/j.1462-2920.2007.01508.x | 2007 | Ammonia, Anaerobiosis, Environmental Microbiology, Gene Expression Profiling, *Gene Expression Regulation, Bacterial, Hydrogen/metabolism, Hydrogen Peroxide, Hydrogen-Ion Concentration, Methane/metabolism, Methanobacteriaceae/*genetics/metabolism, Temperature, Up-Regulation | Transcriptome |
Enzymology | 18757575 | Specific DNA binding of a potential transcriptional regulator, inosine 5'-monophosphate dehydrogenase-related protein VII, to the promoter region of a methyl coenzyme m reductase I-encoding operon retrieved from Methanothermobacter thermautotrophicus strain DeltaH. | Shinzato N, Enoki M, Sato H, Nakamura K, Matsui T, Kamagata Y | Appl Environ Microbiol | 10.1128/AEM.02155-07 | 2008 | Archaeal Proteins/genetics/isolation & purification/*metabolism, DNA, Archaeal/*metabolism, DNA-Binding Proteins/genetics/isolation & purification/*metabolism, Electrophoretic Mobility Shift Assay, *Gene Expression Regulation, Archaeal, IMP Dehydrogenase/genetics/isolation & purification/metabolism, Methanobacteriaceae/*physiology, Operon, Oxidoreductases/*biosynthesis, *Promoter Regions, Genetic, Protein Binding, Protein Structure, Tertiary, Transcription Factors/genetics/isolation & purification/metabolism | Metabolism |
Phylogeny | 18984690 | Thermodesulfovibrio aggregans sp. nov. and Thermodesulfovibrio thiophilus sp. nov., anaerobic, thermophilic, sulfate-reducing bacteria isolated from thermophilic methanogenic sludge, and emended description of the genus Thermodesulfovibrio. | Sekiguchi Y, Muramatsu M, Imachi H, Narihiro T, Ohashi A, Harada H, Hanada S, Kamagata Y | Int J Syst Evol Microbiol | 10.1099/ijs.0.2008/000893-0 | 2008 | Anaerobiosis, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, Fatty Acids/analysis, *Hot Temperature, In Situ Hybridization, Fluorescence, Methane/*metabolism, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Sulfur-Reducing Bacteria/*classification/genetics/isolation & purification/physiology, Waste Disposal, Fluid/methods | Stress |
Metabolism | 19162025 | Functional characterization of the DnaK chaperone system from the archaeon Methanothermobacter thermautotrophicus DeltaH. | Popp SL, Reinstein J | FEBS Lett | 10.1016/j.febslet.2008.12.062 | 2009 | Adenosine Triphosphatases/genetics/metabolism, Archaeal Proteins/genetics/*metabolism, Enzyme Stability/drug effects, Genes, Reporter/genetics, Guanidine/pharmacology, Methanobacteriaceae/*enzymology/genetics, Molecular Chaperones/genetics/*metabolism, Protein Folding | Enzymology |
Metabolism | 19240141 | DNA uracil repair initiated by the archaeal ExoIII homologue Mth212 via direct strand incision. | Schomacher L, Chong JP, McDermott P, Kramer W, Fritz HJ | Nucleic Acids Res | 10.1093/nar/gkp102 | 2009 | Archaeal Proteins/*metabolism, DNA Ligases/metabolism, *DNA Repair, DNA Repair Enzymes/*metabolism, DNA-Directed DNA Polymerase/metabolism, Endodeoxyribonucleases/*metabolism, Flap Endonucleases/metabolism, Methanobacteriaceae/*enzymology, Uracil/*metabolism | Enzymology |
Metabolism | 19618917 | An examination of the relationship between active site loop size and thermodynamic activation parameters for orotidine 5'-monophosphate decarboxylase from mesophilic and thermophilic organisms. | Toth K, Amyes TL, Wood BM, Chan KK, Gerlt JA, Richard JP | Biochemistry | 10.1021/bi901064k | 2009 | Catalysis, Catalytic Domain, Crystallography, X-Ray, Entropy, Enzyme Activation/physiology, Escherichia coli Proteins/chemistry/metabolism, Methanobacteriaceae/enzymology, Orotidine-5'-Phosphate Decarboxylase/*chemistry/*metabolism, Protein Structure, Secondary, Saccharomyces cerevisiae Proteins/chemistry/metabolism, Structural Homology, Protein, Substrate Specificity, *Thermodynamics, Transition Temperature | Enzymology |
Metabolism | 20129830 | Archaeal DNA uracil repair via direct strand incision: A minimal system reconstituted from purified components. | Schomacher L, Schurer KA, Ciirdaeva E, McDermott P, Chong JP, Kramer W, Fritz HJ | DNA Repair (Amst) | 10.1016/j.dnarep.2010.01.004 | 2010 | Archaeal Proteins/genetics/*metabolism, DNA Ligase ATP, DNA Ligases/metabolism, *DNA Repair, DNA, Archaeal/*metabolism, Methanobacteriaceae/*metabolism, Models, Biological, Uracil/*metabolism, Uracil-DNA Glycosidase/metabolism | |
Metabolism | 20434457 | Crystal structure analysis of DNA uridine endonuclease Mth212 bound to DNA. | Lakomek K, Dickmanns A, Ciirdaeva E, Schomacher L, Ficner R | J Mol Biol | 10.1016/j.jmb.2010.04.044 | 2010 | Archaeal Proteins/chemistry/genetics/metabolism, Base Sequence, Catalytic Domain, Crystallography, X-Ray, DNA Repair, DNA, Archaeal/*chemistry/genetics/*metabolism, DNA-(Apurinic or Apyrimidinic Site) Lyase/metabolism, Deoxyribonuclease I/*chemistry/genetics/*metabolism, Exodeoxyribonucleases/chemistry/metabolism, Humans, Macromolecular Substances/chemistry, Methanobacteriaceae/*enzymology/genetics, Models, Molecular, Mutant Proteins/chemistry/genetics/metabolism, Nucleic Acid Conformation, Protein Conformation, Static Electricity, Substrate Specificity | Pathogenicity |
Phylogeny | 21571939 | Thermosyntropha tengcongensis sp. nov., a thermophilic bacterium that degrades long-chain fatty acids syntrophically. | Zhang F, Liu X, Dong X | Int J Syst Evol Microbiol | 10.1099/ijs.0.033456-0 | 2011 | Bacteria, Anaerobic/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, Coculture Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Gram-Positive Bacteria/genetics/metabolism, Hot Springs/*microbiology, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Metabolism |
Metabolism | 21625642 | Mth10b, a unique member of the Sac10b family, does not bind nucleic acid. | Liu YF, Zhang N, Yao HW, Pan XM, Ge M | PLoS One | 10.1371/journal.pone.0019977 | 2011 | Amino Acid Sequence, Archaeal Proteins/chemistry/*metabolism, Chromatography, Liquid, Dimerization, Electrophoresis, Polyacrylamide Gel, Molecular Sequence Data, Nucleic Acids/*metabolism, Sequence Homology, Amino Acid | Enzymology |
Phylogeny | 21705537 | Isolation and characterization of Methanothermobacter crinale sp. nov., a novel hydrogenotrophic methanogen from the Shengli oil field. | Cheng L, Dai L, Li X, Zhang H, Lu Y | Appl Environ Microbiol | 10.1128/AEM.00210-11 | 2011 | Acetates/metabolism, Anaerobiosis, Bacterial Typing Techniques/*methods, Base Composition, Base Sequence, Carbon/metabolism, China, DNA, Bacterial/analysis/chemistry/genetics, DNA, Ribosomal/analysis/genetics, Methane/biosynthesis, Methanobacteriaceae/classification/genetics/growth & development/*isolation & purification, Molecular Sequence Data, Oil and Gas Fields/*microbiology, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Temperature | Metabolism |
Metabolism | 21904627 | Comparative proteomic analysis of Methanothermobacter themautotrophicus DeltaH in pure culture and in co-culture with a butyrate-oxidizing bacterium. | Enoki M, Shinzato N, Sato H, Nakamura K, Kamagata Y | PLoS One | 10.1371/journal.pone.0024309 | 2011 | Bacteria/*metabolism, Bacterial Proteins/metabolism, Butyrates/*metabolism, Coculture Techniques, Methanobacteriaceae/*metabolism, Proteomics/*methods | |
Metabolism | 22511977 | Molecular mechanism underlying the interaction of typical Sac10b family proteins with DNA. | Liu YF, Zhang N, Liu X, Wang X, Wang ZX, Chen Y, Yao HW, Ge M, Pan XM | PLoS One | 10.1371/journal.pone.0034986 | 2012 | Amino Acid Sequence, Archaeal Proteins/*chemistry, Binding Sites, DNA, Archaeal/chemistry/metabolism, DNA-Binding Proteins/*chemistry/metabolism, Methanobacterium/genetics/*metabolism, Models, Molecular, Molecular Sequence Data, Protein Structure, Tertiary, Sequence Alignment | Genetics |
Phylogeny | 22561588 | Methanothermobacter tenebrarum sp. nov., a hydrogenotrophic, thermophilic methanogen isolated from gas-associated formation water of a natural gas field. | Nakamura K, Takahashi A, Mori C, Tamaki H, Mochimaru H, Nakamura K, Takamizawa K, Kamagata Y | Int J Syst Evol Microbiol | 10.1099/ijs.0.041681-0 | 2012 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Japan, Lipids/analysis, Methane/metabolism, Methanobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Natural Gas/microbiology, Oil and Gas Fields/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Water Microbiology | Genetics |
Metabolism | 22652087 | Acceleration of cellulose degradation and shift of product via methanogenic co-culture of a cellulolytic bacterium with a hydrogenotrophic methanogen. | Sasaki D, Morita M, Sasaki K, Watanabe A, Ohmura N | J Biosci Bioeng | 10.1016/j.jbiosc.2012.05.002 | 2012 | Bacteria/metabolism, Biodegradation, Environmental, Bioreactors, Cellulose/*metabolism, Clostridium/*metabolism, *Garbage, Metabolic Networks and Pathways, Methane/*metabolism, Methanobacteriaceae/*metabolism, Molecular Sequence Data | Genetics |
Stress | 23300880 | Without salt, the 'thermophilic' protein Mth10b is just mesophilic. | Zhang N, Pan XM, Ge M | PLoS One | 10.1371/journal.pone.0053125 | 2012 | Bacterial Proteins/*metabolism, Escherichia coli, Hot Temperature, Methanobacterium, Protein Conformation, *Protein Folding, *Sodium Chloride | Proteome |
Metabolism | 24983531 | Physiological and genetic basis for self-aggregation of a thermophilic hydrogenotrophic methanogen, Methanothermobacter strain CaT2. | Kosaka T, Toh H, Fujiyama A, Sakaki Y, Watanabe K, Meng XY, Hanada S, Toyoda A | Environ Microbiol Rep | 10.1111/1758-2229.12128 | 2013 | Bacterial Adhesion/genetics, Gene Expression Profiling, Genes, Bacterial, Genome, Bacterial, Hydrogen/metabolism, Methane/metabolism, Methanobacteriaceae/isolation & purification/*physiology/ultrastructure, Monosaccharides/metabolism, Oxidation-Reduction, Propionates/*metabolism, Transcription, Genetic | Genetics |
25657645 | Methanothermobacter thermautotrophicus modulates its membrane lipids in response to hydrogen and nutrient availability. | Yoshinaga MY, Gagen EJ, Wormer L, Broda NK, Meador TB, Wendt J, Thomm M, Hinrichs KU | Front Microbiol | 10.3389/fmicb.2015.00005 | 2015 | |||
Genetics | 27864137 | Intergenomic evolution and metabolic cross-talk between rumen and thermophilic autotrophic methanogenic archaea. | Bharathi M, Chellapandi P | Mol Phylogenet Evol | 10.1016/j.ympev.2016.11.008 | 2016 | Animals, Archaea/*genetics, *Autotrophic Processes, DNA Replication/genetics, *Evolution, Molecular, Genetic Markers, Genetic Variation, *Genome, Archaeal, Metabolic Networks and Pathways/genetics, Methane/*metabolism, Methanobacteriaceae/genetics, Phylogeny, Rumen/*microbiology, Synteny | Phylogeny |
Metabolism | 30445075 | Functional annotation of operome from Methanothermobacter thermautotrophicus DeltaH: An insight to metabolic gap filling. | Prathiviraj R, Chellapandi P | Int J Biol Macromol | 10.1016/j.ijbiomac.2018.11.100 | 2018 | *Bacterial Proteins/genetics/metabolism, Methanobacteriaceae/genetics/metabolism, *Molecular Sequence Annotation, *Multigene Family | |
Phylogeny | 32375973 | Zhaonella formicivorans gen. nov., sp. nov., an anaerobic formate-utilizing bacterium isolated from Shengli oilfield, and proposal of four novel families and Moorellales ord. nov. in the phylum Firmicutes. | Lv XM, Yang M, Dai LR, Tu B, Chang C, Huang Y, Deng Y, Lawson PA, Zhang H, Cheng L, Tang YQ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004178 | 2020 | Anaerobiosis, Bacteria, Anaerobic/classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Firmicutes/*classification/isolation & purification, Formates/*metabolism, Oil and Gas Fields/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Enzymology |
Phylogeny | 32504807 | Comparative genomic analysis reveals starvation survival systems in Methanothermobacter thermautotrophicus DeltaH. | Prathiviraj R, Chellapandi P | Anaerobe | 10.1016/j.anaerobe.2020.102216 | 2020 | Comparative Genomic Hybridization, DNA, Archaeal/genetics, Genome, Archaeal, Metabolic Networks and Pathways/*genetics, Methanobacteriaceae/*genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, Sequence Analysis, DNA, Stress, Physiological/*genetics | Genetics |
Metabolism | 34809461 | A Shuttle-Vector System Allows Heterologous Gene Expression in the Thermophilic Methanogen Methanothermobacter thermautotrophicus DeltaH. | Fink C, Beblawy S, Enkerlin AM, Muhling L, Angenent LT, Molitor B | mBio | 10.1128/mBio.02766-21 | 2021 | Bacterial Proteins/genetics/metabolism, Conjugation, Genetic, Escherichia coli/genetics/metabolism, Galactosidases/genetics/metabolism, *Gene Expression, Genetic Vectors/*genetics/metabolism, Geobacillus/*enzymology/genetics, Methane/metabolism, Methanobacteriaceae/*genetics/growth & development/metabolism | Enzymology |
Pathogenicity | 36125746 | An Interdomain Conjugation Protocol for Plasmid-DNA Transfer into Methanothermobacter thermautotrophicus DeltaH. | Fink C, Angenent LT, Molitor B | Methods Mol Biol | 10.1007/978-1-0716-2445-6_7 | 2022 | Anaerobiosis, Chemical Phenomena, Humans, *Methane, *Methanobacteriaceae/genetics, Plasmids/genetics | |
Metabolism | 36361694 | Functional Characterization and Screening of Promiscuous Kinases and Isopentenyl Phosphate Kinases for the Synthesis of DMAPP via a One-Pot Enzymatic Cascade. | Qiu C, Liu Y, Wu Y, Zhao L, Pei J | Int J Mol Sci | 10.3390/ijms232112904 | 2022 | *Phosphates/metabolism, *Hemiterpenes, Escherichia coli/metabolism, Organophosphates/metabolism, Terpenes/metabolism, Flavonoids/metabolism |
Reference
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387 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1053) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1053 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
76346 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47306.1 | StrainInfo: A central database for resolving microbial strain identifiers |