Strain identifier

BacDive ID: 6880

Type strain: Yes

Species: Listeria marthii

Strain history: CIP <- 2010, CCUG <- 2008, G. Lewis, CDC, Atlanta, USA <- B. Sauders, Cornell Univ., USA: strain FSL S4-120

NCBI tax ID(s): 702457 (strain), 529731 (species)

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General

@ref: 17384

BacDive-ID: 6880

DSM-Number: 23813

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, motile, rod-shaped

description: Listeria marthii DSM 23813 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from soil.

NCBI tax id

NCBI tax idMatching level
702457strain
529731species

strain history

@refhistory
17384<- CCUG <- L. Graves, CDC, Atlanta, USA <- B. Sauders, Cornell Univ., Ithaca, USA
120844CIP <- 2010, CCUG <- 2008, G. Lewis, CDC, Atlanta, USA <- B. Sauders, Cornell Univ., USA: strain FSL S4-120

doi: 10.13145/bacdive6880.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Listeriaceae
  • genus: Listeria
  • species: Listeria marthii
  • full scientific name: Listeria marthii Graves et al. 2010

@ref: 17384

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Listeriaceae

genus: Listeria

species: Listeria marthii

full scientific name: Listeria marthii Graves et al. 2010

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotility
29490positiverod-shapedyes
120844positiverod-shapedyes

colony morphology

  • @ref: 17384
  • type of hemolysis: gamma
  • incubation period: 1-2 days

pigmentation

  • @ref: 29490
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
17384COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
17384BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
40548MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
120844CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
17384positivegrowth37mesophilic
29490positivegrowth01-45
29490positiveoptimum33.5mesophilic
40548positivegrowth37mesophilic
60878positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29490aerobe
60878microaerophile
120844facultative anaerobe

spore formation

  • @ref: 29490
  • spore formation: no

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2949017234glucose+carbon source
2949017716lactose+carbon source
2949017306maltose+carbon source
294904853esculin+hydrolysis
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol+builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose+builds acid from
6837117151xylitol+builds acid from
6837128087glycogen-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose+builds acid from
6837117306maltose+builds acid from
6837117057cellobiose+builds acid from
6837117814salicin+builds acid from
683714853esculin+builds acid from
6837118305arbutin+builds acid from
6837127613amygdalin+builds acid from
6837159640N-acetylglucosamine+builds acid from
68371320061methyl alpha-D-glucopyranoside+builds acid from
6837143943methyl alpha-D-mannoside+builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol+builds acid from
12084417632nitrate-reduction
12084416301nitrite-reduction
683764853esculin+hydrolysis
6837618333D-arabitol+builds acid from
6837665327D-xylose-builds acid from
6837662345L-rhamnose-builds acid from
68376320061methyl alpha-D-glucopyranoside+builds acid from
6837616988D-ribose-builds acid from
6837629042glucose 1-phosphate-builds acid from
6837616443D-tagatose-builds acid from

metabolite production

@refChebi-IDmetaboliteproduction
2949016136hydrogen sulfideyes
12084435581indoleno

enzymes

@refvalueactivityec
17384catalase+1.11.1.6
17384cytochrome-c oxidase-1.9.3.1
29490catalase+1.11.1.6
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase+3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin+3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68376alpha-mannosidase+3.2.1.24
68376beta-glucosidase+3.2.1.21
120844oxidase-
120844catalase+1.11.1.6
120844urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120844-+++-+-+-+++---++++-

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
120844+---------+++------++++++++++--+---+/--++-----+----

API LIST

@refDIMESCalpha MANDARLXYLRHAMDGRIBG1PTAG
17384-+++--+---
17384-+++--+---

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
17384soilFinger Lakes National Forest, New YorkUSAUSANorth America
60878Soil,forest areaNY,Finger Lakes National ForestUSAUSANorth America1997-07-14
120844Environment, Soil, forestFinger lakes national forest, New YorkUnited States of AmericaUSANorth America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_71.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_32;96_57;97_60;98_65;99_71&stattab=map
  • Last taxonomy: Listeria monocytogenes
  • 16S sequence: EU545982
  • Sequence Identity:
  • Total samples: 28471
  • soil counts: 991
  • aquatic counts: 1408
  • animal counts: 25369
  • plant counts: 703

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
173841Risk group (German classification)
1208441Risk group (French classification)

Sequence information

16S sequences

  • @ref: 17384
  • description: Listeria marthii strain NR-9579 16S ribosomal RNA gene, partial sequence
  • accession: EU545982
  • length: 1394
  • database: ena
  • NCBI tax ID: 529731

External links

@ref: 17384

culture collection no.: DSM 23813, ATCC BAA 1595, BEIR NR 9579, CCUG 56148, FSL S4-120, CIP 110187

straininfo link

  • @ref: 76344
  • straininfo: 370204

literature

  • topic: Phylogeny
  • Pubmed-ID: 19667380
  • title: Listeria marthii sp. nov., isolated from the natural environment, Finger Lakes National Forest.
  • authors: Graves LM, Helsel LO, Steigerwalt AG, Morey RE, Daneshvar MI, Roof SE, Orsi RH, Fortes ED, Milillo SR, den Bakker HC, Wiedmann M, Swaminathan B, Sauders BD
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.014118-0
  • year: 2009
  • mesh: Base Composition, Base Sequence, DNA, Bacterial/chemistry/genetics, Environment, Genome, Bacterial, Introns/genetics, Listeria/classification/genetics/growth & development/*isolation & purification/pathogenicity, Listeria monocytogenes/classification/genetics/growth & development/pathogenicity, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polymorphism, Restriction Fragment Length, RNA, Bacterial/chemistry/genetics, RNA, Ribosomal, 16S/chemistry/genetics, Trees/*microbiology, Virulence
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
17384Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23813)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23813
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29490Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2589028776041
40548Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8019
60878Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 56148)https://www.ccug.se/strain?id=56148
68371Automatically annotated from API 50CH acid
68376Automatically annotated from API LIST
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76344Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID370204.1StrainInfo: A central database for resolving microbial strain identifiers
120844Curators of the CIPCollection of Institut Pasteur (CIP 110187)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110187