Strain identifier

BacDive ID: 6876

Type strain: Yes

Species: Listeria seeligeri

Strain Designation: 1120

Strain history: CIP <- 1984, J. Rocourt, Inst. Pasteur, Paris, France <- H. Seeliger, Würzburg, Germany: strain SLCC 3954

NCBI tax ID(s): 1640 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 9060

BacDive-ID: 6876

DSM-Number: 20751

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, motile, rod-shaped, human pathogen

description: Listeria seeligeri 1120 is a facultative anaerobe, mesophilic, Gram-positive human pathogen that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1640
  • Matching level: species

strain history

@refhistory
9060<- SLCC, 3954 <- J. Weis, 1120
67770CIP 100100 <-- J. Rocourt; Inst. Pasteur, France <-- H. P. R. Seeliger; Germany; SLCC 3954.
122540CIP <- 1984, J. Rocourt, Inst. Pasteur, Paris, France <- H. Seeliger, Würzburg, Germany: strain SLCC 3954

doi: 10.13145/bacdive6876.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Listeriaceae
  • genus: Listeria
  • species: Listeria seeligeri
  • full scientific name: Listeria seeligeri Rocourt and Grimont 1983

@ref: 9060

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Listeriaceae

genus: Listeria

species: Listeria seeligeri

full scientific name: Listeria seeligeri Rocourt and Grimont 1983

strain designation: 1120

type strain: yes

Morphology

cell morphology

  • @ref: 122540
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: yes

colony morphology

@reftype of hemolysisincubation periodhemolysis ability
9060gamma1-2 days
1225401

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9060COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
9060BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
122540CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
122540CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
9060positivegrowth37mesophilic
67770positivegrowth30mesophilic
122540positivegrowth22-37
122540nogrowth5psychrophilic
122540nogrowth10psychrophilic
122540nogrowth41thermophilic
122540nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 122540
  • oxygen tolerance: facultative anaerobe

murein

  • @ref: 9060
  • murein short key: A31
  • type: A1gamma m-Dpm-direct

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1225404853esculin+hydrolysis
12254017632nitrate-reduction
12254016301nitrite-reduction
12254017632nitrate+respiration
6837917632nitrate-reduction
683794853esculin+hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837916988D-ribose-fermentation
6837965327D-xylose+fermentation
6837916899D-mannitol-fermentation
6837917306maltose+fermentation
6837917716lactose+fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation
6837662345L-rhamnose-builds acid from
6837616988D-ribose-builds acid from
6837629042glucose 1-phosphate-builds acid from
6837616443D-tagatose-builds acid from
6838129016arginine-hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose+builds acid from
6838127082trehalose+builds acid from
6838116634raffinose-builds acid from
6838117992sucrose-builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin+builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside+builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
12254035581indoleno
6838115688acetoinyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
6838115688acetoin+
12254015688acetoin+
12254017234glucose+

enzymes

@refvalueactivityec
9060catalase+1.11.1.6
9060cytochrome-c oxidase-1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin+3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68381urease-3.5.1.5
68381beta-mannosidase+3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase+3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase-
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase-3.5.3.6
68376alpha-mannosidase-3.2.1.24
68379catalase+1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase+3.5.1.B15
122540oxidase-
122540beta-galactosidase-3.2.1.23
122540alcohol dehydrogenase-1.1.1.1
122540catalase+1.11.1.6
122540lysine decarboxylase-4.1.1.18
122540ornithine decarboxylase-4.1.1.17
122540urease-3.5.1.5

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlRIBXYLMANMALLACSACGLYGCAT
46271-+-+--+-+----+-++--+

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122540-+++-+---+++---+++--

API LIST

@refDIMESCalpha MANDARLXYLRHAMDGRIBG1PTAGbeta HEM
9060++-++-+---
9060++-++-+----
9060++-++-+---
46271++-++-+---+
122540---------

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
46271-+-------++----++---+----+--+-+-

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
9060soil
46271SoilGermanyDEUEurope
67770Soil from Germany
122540Environment, SoilGermanyDEUEurope

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_769.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_32;96_57;97_60;98_65;99_769&stattab=map
  • Last taxonomy: Listeria
  • 16S sequence: X98531
  • Sequence Identity:
  • Total samples: 23992
  • soil counts: 505
  • aquatic counts: 973
  • animal counts: 22181
  • plant counts: 333

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
9060yes, in single cases1Risk group (German classification)
1225401Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Listeria seeligeri partial 16S rRNA gene, type strain CECT 917TAJ5155181014ena1640
20218Listeria seeligeri strain ATCC 35967 16S ribosomal RNA gene, partial sequenceGQ911562805ena1640
9060Listeria seeligeri strain ATCC 35967 16S ribosomal RNA, tRNA-Ile, and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequenceDQ0658452434ena1640
67770L.seeligeri gene for 16S ribosomal RNAX561481452ena1640
67770L.seeligeri DNA for 16S ribosomal RNAX985311418ena1640

Genome sequences

  • @ref: 67770
  • description: Listeria seeligeri serovar 1/2b str. SLCC3954
  • accession: GCA_000027145
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 683837

GC content

@refGC-contentmethod
906036.0
6777036thermal denaturation, midpoint method (Tm)

External links

@ref: 9060

culture collection no.: CCUG 15530, CIP 100.100, CECT 917, NCTC 11856, CCM 3970, DSM 20751, ATCC 35967, CIP 100100, SLCC 3954, JCM 32815, BCRC 15361, LMG 11386, NCAIM B.01873

straininfo link

  • @ref: 76340
  • straininfo: 3532

literature

  • topic: Genetics
  • Pubmed-ID: 20061480
  • title: Complete genome sequence of Listeria seeligeri, a nonpathogenic member of the genus Listeria.
  • authors: Steinweg C, Kuenne CT, Billion A, Mraheil MA, Domann E, Ghai R, Barbuddhe SB, Karst U, Goesmann A, Puhler A, Weisshaar B, Wehland J, Lampidis R, Kreft J, Goebel W, Chakraborty T, Hain T
  • journal: J Bacteriol
  • DOI: 10.1128/JB.01415-09
  • year: 2010
  • mesh: DNA, Bacterial/*chemistry/*genetics, *Genome, Bacterial, Listeria/*genetics, *Molecular Sequence Data, *Sequence Analysis, DNA
  • topic2: Transcriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9060Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20751)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20751
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
46271Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 15530)https://www.ccug.se/strain?id=15530
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68376Automatically annotated from API LIST
68379Automatically annotated from API Coryne
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76340Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3532.1StrainInfo: A central database for resolving microbial strain identifiers
122540Curators of the CIPCollection of Institut Pasteur (CIP 100100)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20100100