Strain identifier
BacDive ID: 6876
Type strain:
Species: Listeria seeligeri
Strain Designation: 1120
Strain history: CIP <- 1984, J. Rocourt, Inst. Pasteur, Paris, France <- H. Seeliger, Würzburg, Germany: strain SLCC 3954
NCBI tax ID(s): 1640 (species)
General
@ref: 9060
BacDive-ID: 6876
DSM-Number: 20751
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, motile, rod-shaped, human pathogen
description: Listeria seeligeri 1120 is a facultative anaerobe, mesophilic, Gram-positive human pathogen that was isolated from soil.
NCBI tax id
- NCBI tax id: 1640
- Matching level: species
strain history
@ref | history |
---|---|
9060 | <- SLCC, 3954 <- J. Weis, 1120 |
67770 | CIP 100100 <-- J. Rocourt; Inst. Pasteur, France <-- H. P. R. Seeliger; Germany; SLCC 3954. |
122540 | CIP <- 1984, J. Rocourt, Inst. Pasteur, Paris, France <- H. Seeliger, Würzburg, Germany: strain SLCC 3954 |
doi: 10.13145/bacdive6876.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Listeriaceae
- genus: Listeria
- species: Listeria seeligeri
- full scientific name: Listeria seeligeri Rocourt and Grimont 1983
@ref: 9060
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Listeriaceae
genus: Listeria
species: Listeria seeligeri
full scientific name: Listeria seeligeri Rocourt and Grimont 1983
strain designation: 1120
type strain: yes
Morphology
cell morphology
- @ref: 122540
- gram stain: positive
- cell shape: rod-shaped
- motility: yes
colony morphology
@ref | type of hemolysis | incubation period | hemolysis ability |
---|---|---|---|
9060 | gamma | 1-2 days | |
122540 | 1 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
9060 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
9060 | BHI MEDIUM (DSMZ Medium 215) | yes | https://mediadive.dsmz.de/medium/215 | Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water |
122540 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 | |
122540 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
9060 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
122540 | positive | growth | 22-37 | |
122540 | no | growth | 5 | psychrophilic |
122540 | no | growth | 10 | psychrophilic |
122540 | no | growth | 41 | thermophilic |
122540 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 122540
- oxygen tolerance: facultative anaerobe
murein
- @ref: 9060
- murein short key: A31
- type: A1gamma m-Dpm-direct
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
122540 | 4853 | esculin | + | hydrolysis |
122540 | 17632 | nitrate | - | reduction |
122540 | 16301 | nitrite | - | reduction |
122540 | 17632 | nitrate | + | respiration |
68379 | 17632 | nitrate | - | reduction |
68379 | 4853 | esculin | + | hydrolysis |
68379 | 16199 | urea | - | hydrolysis |
68379 | 5291 | gelatin | - | hydrolysis |
68379 | 16988 | D-ribose | - | fermentation |
68379 | 65327 | D-xylose | + | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | + | fermentation |
68379 | 17716 | lactose | + | fermentation |
68379 | 17992 | sucrose | - | fermentation |
68379 | 28087 | glycogen | - | fermentation |
68376 | 62345 | L-rhamnose | - | builds acid from |
68376 | 16988 | D-ribose | - | builds acid from |
68376 | 29042 | glucose 1-phosphate | - | builds acid from |
68376 | 16443 | D-tagatose | - | builds acid from |
68381 | 29016 | arginine | - | hydrolysis |
68381 | 16988 | D-ribose | - | builds acid from |
68381 | 16899 | D-mannitol | - | builds acid from |
68381 | 30911 | sorbitol | - | builds acid from |
68381 | 17716 | lactose | + | builds acid from |
68381 | 27082 | trehalose | + | builds acid from |
68381 | 16634 | raffinose | - | builds acid from |
68381 | 17992 | sucrose | - | builds acid from |
68381 | 30849 | L-arabinose | - | builds acid from |
68381 | 18333 | D-arabitol | - | builds acid from |
68381 | 40585 | alpha-cyclodextrin | + | builds acid from |
68381 | 606565 | hippurate | - | hydrolysis |
68381 | 28087 | glycogen | - | builds acid from |
68381 | 27941 | pullulan | - | builds acid from |
68381 | 17306 | maltose | + | builds acid from |
68381 | 28053 | melibiose | - | builds acid from |
68381 | 6731 | melezitose | - | builds acid from |
68381 | 320055 | methyl beta-D-glucopyranoside | + | builds acid from |
68381 | 16443 | D-tagatose | - | builds acid from |
68381 | 16199 | urea | - | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
122540 | 35581 | indole | no |
68381 | 15688 | acetoin | yes |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
68381 | 15688 | acetoin | + | |
122540 | 15688 | acetoin | + | |
122540 | 17234 | glucose | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
9060 | catalase | + | 1.11.1.6 |
9060 | cytochrome-c oxidase | - | 1.9.3.1 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | + | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68381 | urease | - | 3.5.1.5 |
68381 | beta-mannosidase | + | 3.2.1.25 |
68381 | glycyl tryptophan arylamidase | - | |
68381 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68381 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68381 | beta-galactosidase | - | 3.2.1.23 |
68381 | Alanyl-Phenylalanyl-Proline arylamidase | - | |
68381 | alkaline phosphatase | - | 3.1.3.1 |
68381 | alpha-galactosidase | - | 3.2.1.22 |
68381 | beta-glucuronidase | - | 3.2.1.31 |
68381 | beta-glucosidase | + | 3.2.1.21 |
68381 | arginine dihydrolase | - | 3.5.3.6 |
68376 | alpha-mannosidase | - | 3.2.1.24 |
68379 | catalase | + | 1.11.1.6 |
68379 | gelatinase | - | |
68379 | urease | - | 3.5.1.5 |
68379 | beta-glucosidase | + | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | + | 3.2.1.20 |
68379 | beta-galactosidase | - | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | + | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68379 | pyrazinamidase | + | 3.5.1.B15 |
122540 | oxidase | - | |
122540 | beta-galactosidase | - | 3.2.1.23 |
122540 | alcohol dehydrogenase | - | 1.1.1.1 |
122540 | catalase | + | 1.11.1.6 |
122540 | lysine decarboxylase | - | 4.1.1.18 |
122540 | ornithine decarboxylase | - | 4.1.1.17 |
122540 | urease | - | 3.5.1.5 |
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | Control | RIB | XYL | MAN | MAL | LAC | SAC | GLYG | CAT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
46271 | - | + | - | + | - | - | + | - | + | - | - | - | - | + | - | + | + | - | - | + |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
122540 | - | + | + | + | - | + | - | - | - | + | + | + | - | - | - | + | + | + | - | - |
API LIST
@ref | DIM | ESC | alpha MAN | DARL | XYL | RHA | MDG | RIB | G1P | TAG | beta HEM |
---|---|---|---|---|---|---|---|---|---|---|---|
9060 | + | + | - | + | + | - | + | - | - | - | |
9060 | + | + | - | + | + | - | + | - | - | - | - |
9060 | + | + | - | + | + | - | + | - | - | - | |
46271 | + | + | - | + | + | - | + | - | - | - | + |
122540 | - | - | - | - | - | - | - | - | - |
API rID32STR
@ref | ADH Arg | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | CDEX | VP | APPA | beta GAL | PyrA | beta NAG | GTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Mbeta DG | TAG | beta MAN | URE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
46271 | - | + | - | - | - | - | - | - | - | + | + | - | - | - | - | + | + | - | - | - | + | - | - | - | - | + | - | - | + | - | + | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
9060 | soil | |||
46271 | Soil | Germany | DEU | Europe |
67770 | Soil from Germany | |||
122540 | Environment, Soil | Germany | DEU | Europe |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_769.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_32;96_57;97_60;98_65;99_769&stattab=map
- Last taxonomy: Listeria
- 16S sequence: X98531
- Sequence Identity:
- Total samples: 23992
- soil counts: 505
- aquatic counts: 973
- animal counts: 22181
- plant counts: 333
Safety information
risk assessment
@ref | pathogenicity human | biosafety level | biosafety level comment |
---|---|---|---|
9060 | yes, in single cases | 1 | Risk group (German classification) |
122540 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Listeria seeligeri partial 16S rRNA gene, type strain CECT 917T | AJ515518 | 1014 | ena | 1640 |
20218 | Listeria seeligeri strain ATCC 35967 16S ribosomal RNA gene, partial sequence | GQ911562 | 805 | ena | 1640 |
9060 | Listeria seeligeri strain ATCC 35967 16S ribosomal RNA, tRNA-Ile, and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence | DQ065845 | 2434 | ena | 1640 |
67770 | L.seeligeri gene for 16S ribosomal RNA | X56148 | 1452 | ena | 1640 |
67770 | L.seeligeri DNA for 16S ribosomal RNA | X98531 | 1418 | ena | 1640 |
Genome sequences
- @ref: 67770
- description: Listeria seeligeri serovar 1/2b str. SLCC3954
- accession: GCA_000027145
- assembly level: complete
- database: ncbi
- NCBI tax ID: 683837
GC content
@ref | GC-content | method |
---|---|---|
9060 | 36.0 | |
67770 | 36 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 9060
culture collection no.: CCUG 15530, CIP 100.100, CECT 917, NCTC 11856, CCM 3970, DSM 20751, ATCC 35967, CIP 100100, SLCC 3954, JCM 32815, BCRC 15361, LMG 11386, NCAIM B.01873
straininfo link
- @ref: 76340
- straininfo: 3532
literature
- topic: Genetics
- Pubmed-ID: 20061480
- title: Complete genome sequence of Listeria seeligeri, a nonpathogenic member of the genus Listeria.
- authors: Steinweg C, Kuenne CT, Billion A, Mraheil MA, Domann E, Ghai R, Barbuddhe SB, Karst U, Goesmann A, Puhler A, Weisshaar B, Wehland J, Lampidis R, Kreft J, Goebel W, Chakraborty T, Hain T
- journal: J Bacteriol
- DOI: 10.1128/JB.01415-09
- year: 2010
- mesh: DNA, Bacterial/*chemistry/*genetics, *Genome, Bacterial, Listeria/*genetics, *Molecular Sequence Data, *Sequence Analysis, DNA
- topic2: Transcriptome
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
9060 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20751) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20751 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
46271 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 15530) | https://www.ccug.se/strain?id=15530 | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68376 | Automatically annotated from API LIST | |||||
68379 | Automatically annotated from API Coryne | |||||
68381 | Automatically annotated from API rID32STR | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
76340 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID3532.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
122540 | Curators of the CIP | Collection of Institut Pasteur (CIP 100100) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20100100 |