Strain identifier

BacDive ID: 6872

Type strain: Yes

Species: Listeria ivanovii

Strain Designation: Li 1979

Strain history: CIP <- 1978, H. Seeliger, Wurzburg Univ., Wurzburg, Germany: strain SLCC 2379, Listeria monocytogenes serotype 5, "Listeria bulgarica" <- I. Ivanov

NCBI tax ID(s): 1638 (species)

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General

@ref: 9059

BacDive-ID: 6872

DSM-Number: 20750

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive

description: Listeria ivanovii Li 1979 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from sheep.

NCBI tax id

  • NCBI tax id: 1638
  • Matching level: species

strain history

@refhistory
9059<- SLCC; SLCC 2379 <- H. P. R. Seeliger; Li 1979 <- I. Iwanow;
67770CCM 5884 <-- H. P. R. Seeliger Li 1979 <-- J. Donker-Voet 74a.
120300CIP <- 1978, H. Seeliger, Wurzburg Univ., Wurzburg, Germany: strain SLCC 2379, Listeria monocytogenes serotype 5, "Listeria bulgarica" <- I. Ivanov

doi: 10.13145/bacdive6872.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Listeriaceae
  • genus: Listeria
  • species: Listeria ivanovii
  • full scientific name: Listeria ivanovii Seeliger et al. 1984

@ref: 9059

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Listeriaceae

genus: Listeria

species: Listeria ivanovii subsp. ivanovii

full scientific name: Listeria ivanovii subsp. ivanovii (Seeliger et al. 1984) Boerlin et al. 1992

strain designation: Li 1979

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480positive100
120300positiverod-shapedyes

colony morphology

@reftype of hemolysishemolysis abilityincubation period
9059beta11-2 days
68376beta1
1203001

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9059COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
9059BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
41942MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
120300CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
9059positivegrowth37mesophilic
41942positivegrowth30mesophilic
46269positivegrowth37mesophilic
67770positivegrowth37mesophilic
120300positivegrowth10-41
120300nogrowth5psychrophilic
120300nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
46269aerobe
120300facultative anaerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.732

murein

  • @ref: 9059
  • murein short key: A31
  • type: A1gamma m-Dpm-direct

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside+builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
120300esculin+hydrolysis4853
120300nitrate-reduction17632
120300nitrite-reduction16301
120300nitrate+respiration17632
68379nitrate-reduction17632
68379esculin+hydrolysis4853
68379urea-hydrolysis16199
68379gelatin-hydrolysis5291
68379D-ribose+fermentation16988
68379D-xylose+fermentation65327
68379D-mannitol-fermentation16899
68379maltose+fermentation17306
68379lactose-fermentation17716
68379sucrose-fermentation17992
68379glycogen-fermentation28087

metabolite production

  • @ref: 120300
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 120300
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
9059catalase+1.11.1.6
9059cytochrome-c oxidase-1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin+3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68376alpha-mannosidase-3.2.1.24
68379catalase+1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase+3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
120300oxidase-
120300catalase+1.11.1.6
120300urease-3.5.1.5

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlRIBXYLMANMALLACSACGLYGCAT
46269---+--+++---++-+---+

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120300-+++-+---+++---+++--

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
9059-----++----+++-------++++++++/-+/---+-----+/-+-----+/-----

API LIST

@refDIMESCalpha MANDARLXYLRHAMDGRIBG1PTAGbeta HEM
9059++-++-+++-+
9059++-++-+++-+
9059++-++-+++-+
9059++-++-+++-
9059-+-++-+++-
9059++-+++/-++++/-+
120300----------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
9059sheep
46269SheepBulgariaBGREurope
67770SheepBulgariaBGREurope
120300Animal, SheepBulgariaBGREurope

isolation source categories

  • Cat1: #Host
  • Cat2: #Mammals
  • Cat3: #Caprinae (Sheep/Goat)

taxonmaps

  • @ref: 69479
  • File name: preview.99_769.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_32;96_57;97_60;98_65;99_769&stattab=map
  • Last taxonomy: Listeria
  • 16S sequence: X98528
  • Sequence Identity:
  • Total samples: 23992
  • soil counts: 505
  • aquatic counts: 973
  • animal counts: 22181
  • plant counts: 333

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
90592Risk group (German classification)
1203002Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Listeria ivanovii partial 16S rRNA gene, type strain CECT 913TAJ5155171000ena1638
20218Listeria ivanovii strain ATCC 19119 16S ribosomal RNA gene, partial sequenceGQ911560805ena1638
20218Listeria ivanovii 16S and 23S ribosomal RNA genes, partial sequence, Ile-tRNA and Ala-tRNA genes, complete sequenceU57913581ena1638
20218Listeria ivanovii 16S ribosomal RNA gene, partial sequence, 16S/23S ribosomal RNA intergenic spacer region, complete sequence and 23S ribosomal RNA gene, partial sequenceU78981335ena1638
9059L.ivanovii gene for 16S ribosomal RNAX561511491ena1638
67770L.ivanovii DNA for 16S ribosomal RNA (strain CLIP12510)X985281450ena202751

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Listeria ivanovii subsp. ivanovii NCTC11846GCA_900187025completencbi202751
66792Listeria ivanovii subsp. ivanovii202751.4completepatric202751
66792Listeria ivanovii ivanovii NCTC 118462823437510completeimg202751

GC content

  • @ref: 9059
  • GC-content: 38.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes54no
motileyes75.184no
flagellatedno56.668no
gram-positiveyes93.419no
anaerobicno94.016no
aerobicno87.564no
halophileno56.296no
spore-formingno62.654no
thermophileno99.434yes
glucose-utilyes87.971no
glucose-fermentyes59.824no

External links

@ref: 9059

culture collection no.: CCUG 15528, CCM 5884, NCTC 11846, CIP 78.42, CECT 913, DSM 20750, ATCC 19119, WDCM 00018, SLCC 2379, JCM 7681, BCRC 14844, KCTC 3444, LMG 11388, NCAIM B.02035, NRRL B-33017, VTT E-97771

straininfo link

  • @ref: 76337
  • straininfo: 389407

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology1649098Cloning and expression in Escherichia coli of a gene encoding superoxide dismutase from Listeria ivanovii.Haas A, Goebel WFree Radic Res Commun10.3109/107157691091458061991Bacterial Proteins/biosynthesis/*genetics, Cloning, Molecular, Cytochrome c Group/metabolism, Escherichia coli/genetics, Genetic Vectors, Listeria/*genetics, Oxidation-Reduction, Recombinant Proteins/biosynthesis/genetics, Superoxide Dismutase/biosynthesis/*geneticsMetabolism
Genetics2561038Purification and characterization of cytolysins from Listeria monocytogenes serovar 4b and Listeria ivanovii.Kreft J, Funke D, Schlesinger R, Lottspeich F, Goebel WActa Microbiol Hung1989Amino Acid Sequence, *Bacterial Toxins, DNA Transposable Elements, Heat-Shock Proteins/*analysis/genetics, Hemolysin Proteins/*analysis/genetics, Listeria/*analysis/genetics, Molecular Sequence Data, Phenotype, Phospholipases/analysis, Sphingomyelin Phosphodiesterase/analysisPhenotype
Metabolism8675289The ActA polypeptides of Listeria ivanovii and Listeria monocytogenes harbor related binding sites for host microfilament proteins.Gerstel B, Grobe L, Pistor S, Chakraborty T, Wehland JInfect Immun10.1128/iai.64.6.1929-1936.19961996Amino Acid Sequence, Bacterial Proteins/*chemistry/genetics/metabolism, Base Sequence, Binding Sites, Cell Adhesion Molecules/metabolism, Listeria/*chemistry/genetics, Listeria monocytogenes/*chemistry/genetics, Membrane Proteins/*chemistry/genetics/metabolism, Microfilament Proteins/*metabolism, Molecular Sequence Data, Phosphoproteins/metabolismGenetics
Enzymology19100330Effect of modified MRS medium on production and purification of antimicrobial peptide ST4SA produced by Enterococcus mundtii.Todorov SD, Dicks LMAnaerobe10.1016/j.anaerobe.2008.11.0022008Antimicrobial Cationic Peptides/*biosynthesis/*isolation & purification, Bacteriolysis, Chemical Fractionation, Chromatography, Gel, Culture Media/*chemistry, Enterococcus/growth & development/*metabolism, Listeria/drug effects, Microbial ViabilityBiotechnology
Phylogeny19446352Bacteriocin production by Pediococcus pentosaceus isolated from marula (Scerocarya birrea).Todorov SD, Dicks LMInt J Food Microbiol10.1016/j.ijfoodmicro.2009.04.0102009Anacardiaceae/*microbiology, Anti-Bacterial Agents/antagonists & inhibitors/*biosynthesis/pharmacology, Bacteriocins/antagonists & inhibitors/*biosynthesis/pharmacology, Ciprofloxacin/pharmacology, Drug Synergism, Hydrogen-Ion Concentration, Molecular Weight, Pediocins, Pediococcus/isolation & purification/*metabolism, Peptide Hydrolases/*pharmacology, Species Specificity, TemperatureBiotechnology
Phylogeny20152920Characterization of a bacteriocin produced by Lactobacillus sakei R1333 isolated from smoked salmon.Todorov SD, Rachman C, Fourrier A, Dicks LM, van Reenen CA, Prevost H, Dousset XAnaerobe10.1016/j.anaerobe.2010.01.0042010Animals, Anti-Bacterial Agents/isolation & purification/*metabolism, Bacterial Typing Techniques, Bacteriocins/chemistry/isolation & purification/*metabolism, Chemical Fractionation, Chromatography, High Pressure Liquid, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Food Microbiology, Lactobacillus/classification/drug effects/isolation & purification/*metabolism, Lactococcus/drug effects, Listeria/drug effects, Mass Spectrometry, Molecular Weight, RNA, Ribosomal, 16S/genetics, Salmon/*microbiology, Sequence Analysis, DNA, Streptococcus/drug effectsPathogenicity
Pathogenicity20688228Characterisation of an antiviral pediocin-like bacteriocin produced by Enterococcus faecium.Todorov SD, Wachsman M, Tome E, Dousset X, Destro MT, Dicks LM, Franco BD, Vaz-Velho M, Drider DFood Microbiol10.1016/j.fm.2010.05.0012010Animals, Anti-Bacterial Agents/pharmacology, Antibiosis, Antiviral Agents/pharmacology, Bacteriocins/biosynthesis/*pharmacology, Colony Count, Microbial, Consumer Product Safety, Enterococcus faecium/metabolism/*physiology, Food Microbiology, Herpesvirus 1, Human/*drug effects/growth & development, Humans, Listeria/drug effects, Listeria monocytogenes/*drug effects/growth & development, Microbial Sensitivity Tests, Molecular Weight, Salmon/*microbiology, Seafood/microbiologyBiotechnology
Metabolism23845432Enterococcus faecalis strains from food, environmental, and clinical origin produce ACE-inhibitory peptides and other bioactive peptides during growth in bovine skim milk.Gutiez L, Gomez-Sala B, Recio I, del Campo R, Cintas LM, Herranz C, Hernandez PEInt J Food Microbiol10.1016/j.ijfoodmicro.2013.06.0192013Animals, Cattle, Electrophoresis, Gel, Pulsed-Field, Enterococcus faecalis/genetics/growth & development/*metabolism, *Environmental Microbiology, Enzyme Inhibitors/*metabolism, *Food Microbiology, Gram-Positive Bacterial Infections/microbiology, Milk/*microbiology, Multilocus Sequence Typing, Peptides/*metabolism, Peptidyl-Dipeptidase A/metabolism, Tandem Mass SpectrometryEnzymology
Metabolism24929719Listeria ivanovii ATCC 19119 strain behaviour is modulated by iron and acid stress.Longhi C, Ammendolia MG, Conte MP, Seganti L, Iosi F, Superti FFood Microbiol10.1016/j.fm.2014.02.0152014Acids/*metabolism, Caco-2 Cells, Humans, Hydrogen-Ion Concentration, Iron/*metabolism, Listeria/*metabolism/pathogenicity, Listeriosis/*microbiology, VirulencePathogenicity
Metabolism25163588Biotechnical paving of recombinant enterocin A as the candidate of anti-Listeria agent.Hu X, Mao R, Zhang Y, Teng D, Wang X, Xi D, Huang J, Wang JBMC Microbiol10.1186/s12866-014-0220-82014Bacteriocins/genetics/*isolation & purification/metabolism/*pharmacology, Chromatography, Gel, Enzyme Activators/metabolism, Gene Expression, Genetic Vectors, Hydrogen-Ion Concentration, Listeria/*drug effects, Microbial Sensitivity Tests, Molecular Sequence Data, Pichia/genetics/metabolism, Protein Stability, Recombinant Proteins/genetics/isolation & purification/metabolism/pharmacology, Sequence Analysis, DNA, Sodium Chloride/metabolism, TemperatureEnzymology
Genetics25614561Genome Sequences of the Listeria ivanovii subsp. ivanovii Type Strain and Two Listeria ivanovii subsp. londoniensis Strains.Hupfeld M, Fouts DE, Loessner MJ, Klumpp JGenome Announc10.1128/genomeA.01440-142015
Enzymology27894288Bactericidal and antioxidant properties of essential oils from the fruits Dennettia tripetala G. Baker.Okoh SO, Iweriegbor BC, Okoh OO, Nwodo UU, I Okoh ABMC Complement Altern Med10.1186/s12906-016-1459-42016Animals, Annonaceae/*chemistry/toxicity, Anti-Bacterial Agents/*isolation & purification/pharmacology/toxicity, Antioxidants/*pharmacology/toxicity, Cytotoxins/toxicity, Free Radical Scavengers/pharmacology/toxicity, Fruit/chemistry, Hemolysis, Microbial Sensitivity Tests, Oils, Volatile/*pharmacology/toxicity, Plant Extracts/*pharmacology/toxicity, Plant Oils/*pharmacology/toxicity, SheepPhylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9059Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20750)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20750
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41942Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10991
46269Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 15528)https://www.ccug.se/strain?id=15528
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68376Automatically annotated from API LIST
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
76337Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389407.1StrainInfo: A central database for resolving microbial strain identifiers
120300Curators of the CIPCollection of Institut Pasteur (CIP 78.42)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2078.42