Strain identifier

BacDive ID: 6863

Type strain: Yes

Species: Fructobacillus pseudoficulneus

Strain Designation: LC-51, LC51

Strain history: CIP <- 2006, CECT <- 2002, L. Chambel, Lisboa Univ., Lisboa, Portugal: strain LC51

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 5941

BacDive-ID: 6863

DSM-Number: 15468

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, ovoid-shaped

description: Fructobacillus pseudoficulneus LC-51 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from fruit, ripe fig.

NCBI tax id

NCBI tax idMatching level
1121907strain
220714species

strain history

@refhistory
5941<- R. Tenreiro; LC-51 <- L. Chambel
67770NRIC 0698 <-- DSM 15468 <-- R. Tenreiro LC-51 <-- L. Chambel.
121986CIP <- 2006, CECT <- 2002, L. Chambel, Lisboa Univ., Lisboa, Portugal: strain LC51

doi: 10.13145/bacdive6863.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Fructobacillus
  • species: Fructobacillus pseudoficulneus
  • full scientific name: Fructobacillus pseudoficulneus (Chambel et al. 2006) Endo and Okada 2008
  • synonyms

    • @ref: 20215
    • synonym: Leuconostoc pseudoficulneum

@ref: 5941

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Leuconostocaceae

genus: Fructobacillus

species: Fructobacillus pseudoficulneus

full scientific name: Fructobacillus pseudoficulneus (Chambel et al. 2006) Endo and Okada 2008

strain designation: LC-51, LC51

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
31686positive2.2-3 µm0.7-1.1 µmovoid-shapedno
69480no96.284
69480positive100
121986positiverod-shapedno

pigmentation

  • @ref: 31686
  • production: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5941MRS MEDIUM (DSMZ Medium 11)yeshttps://mediadive.dsmz.de/medium/11Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
37507MEDIUM 40- for Lactobacillus and LeuconostocyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
121986CIP Medium 40yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40

culture temp

@refgrowthtypetemperaturerange
5941positivegrowth30mesophilic
31686positivegrowth30-37mesophilic
31686positiveoptimum30mesophilic
37507positivegrowth30mesophilic
67770positivegrowth30mesophilic
121986positivegrowth15-37
121986nogrowth45thermophilic

culture pH

@refabilitytypepHPH range
31686positivegrowth4.8-8.5alkaliphile
31686positiveoptimum6.5-7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
5941microaerophile
31686facultative anaerobe
121986obligate aerobe

spore formation

@refspore formationconfidence
31686no
69481no100
69480no99.999

halophily

@refsaltgrowthtested relationconcentration
31686NaClpositivegrowth03-05 %
31686NaClpositiveoptimum03-05 %

observation

  • @ref: 31686
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3168629864mannitol+carbon source
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose+builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
12198617632nitrate-reduction
12198616301nitrite-reduction
12198617632nitrate+respiration

metabolite production

  • @ref: 121986
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 121986
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
31686acid phosphatase+3.1.3.2
31686alkaline phosphatase+3.1.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)-
68382alkaline phosphatase+3.1.3.1
121986oxidase-
121986alcohol dehydrogenase-1.1.1.1
121986catalase-1.11.1.6
121986lysine decarboxylase-4.1.1.18
121986ornithine decarboxylase-4.1.1.17
121986urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121986-+--------+---------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
121986----------+/-+-----+/-----------------------------+/---

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
5941fruit, ripe figPortugalPRTEurope
67770Ripe figPortugalPRTEuropeAlentejo region
121986Ripe figPortugalPRTEuropeAlentejo

isolation source categories

  • Cat1: #Host Body-Site
  • Cat2: #Plant
  • Cat3: #Fruit (Seed)

taxonmaps

  • @ref: 69479
  • File name: preview.99_2538.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_22;96_1366;97_1622;98_1973;99_2538&stattab=map
  • Last taxonomy: Fructobacillus
  • 16S sequence: LC519998
  • Sequence Identity:
  • Total samples: 1983
  • soil counts: 61
  • aquatic counts: 157
  • animal counts: 1617
  • plant counts: 148

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
59411Risk group (German classification)
1219861Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Fructobacillus pseudoficulneus DNA, 16S-23S rRNA intergenic spacer region, strain: DSM 15468AB290447363ena220714
31686Fructobacillus pseudoficulneus strain LC51 16S ribosomal RNA gene, partial sequenceAY1699671494nuccore220714
67770Fructobacillus pseudoficulneus JCM 17832 gene for 16S rRNA, partial sequenceLC5199981481ena220714
5941AY16997ena

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Fructobacillus pseudoficulneus strain DSM 15468220714.4wgspatric220714
66792Fructobacillus pseudoficulneus strain DSM 15468220714.3wgspatric220714
66792Fructobacillus pseudoficulneus DSM 154682814123065draftimg220714
66792Fructobacillus pseudoficulneus DSM 154682600254955draftimg220714
67770Fructobacillus pseudoficulneus DSM 15468GCA_001047115scaffoldncbi220714
67770Fructobacillus pseudoficulneus DSM 15468GCA_900108455scaffoldncbi220714

GC content

@refGC-contentmethod
594144.5
6777044.5high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno96.904yes
gram-positiveyes94.064no
anaerobicno84.321no
aerobicno97.315yes
halophileyes89.952no
spore-formingno96.719no
glucose-utilyes84.555no
flagellatedno98.656no
thermophileno98.707no
glucose-fermentyes86.621no

External links

@ref: 5941

culture collection no.: DSM 15468, CECT 5759, JCM 17832, BCRC 81234, CIP 109309, LMG 23899, NCIMB 14364, NRIC 0698

straininfo link

  • @ref: 76328
  • straininfo: 194264

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16738117Leuconostoc pseudoficulneum sp. nov., isolated from a ripe fig.Chambel L, Chelo IM, Ze-Ze L, Pedro LG, Santos MA, Tenreiro RInt J Syst Evol Microbiol10.1099/ijs.0.64054-02006Base Composition, DNA Primers, DNA, Bacterial/genetics, Fruit/*microbiology, Leuconostoc/*classification/*genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Polymorphism, Restriction Fragment Length, Species SpecificityGenetics
Phylogeny18768629Reclassification of the genus Leuconostoc and proposals of Fructobacillus fructosus gen. nov., comb. nov., Fructobacillus durionis comb. nov., Fructobacillus ficulneus comb. nov. and Fructobacillus pseudoficulneus comb. nov.Endo A, Okada SInt J Syst Evol Microbiol10.1099/ijs.0.65609-02008Acetic Acid/metabolism, Bacterial Proteins/genetics, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA, Ribosomal Spacer/chemistry/genetics, DNA-Directed RNA Polymerases/genetics, Ethanol/metabolism, Genes, rRNA, Genotype, Glucose/metabolism, Leuconostoc/*classification/cytology/genetics/metabolism, Microscopy, Electron, Scanning, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Rec A Recombinases/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic AcidMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
5941Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15468)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15468
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
31686Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604127963
37507Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7036
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
76328Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID194264.1StrainInfo: A central database for resolving microbial strain identifiers
121986Curators of the CIPCollection of Institut Pasteur (CIP 109309)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109309