Strain identifier

BacDive ID: 6862

Type strain: Yes

Species: Fructobacillus ficulneus

Strain Designation: FS-1

Culture col. no.: DSM 13613, JCM 12225, LMG 21928, NRRL B-23447

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General

@ref: 5114

BacDive-ID: 6862

DSM-Number: 13613

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Fructobacillus ficulneus FS-1 is a mesophilic bacterium that was isolated from ripe fig.

strain history: <- M.S. da Costa; FS-1

doi: 10.13145/bacdive6862.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/firmicutes
  • domain: Bacteria
  • phylum: Firmicutes
  • class: Bacilli
  • order: Lactobacillales
  • family: Leuconostocaceae
  • genus: Fructobacillus
  • species: Fructobacillus ficulneus
  • full scientific name: Fructobacillus ficulneus (Antunes et al. 2002) Endo and Okada 2008
  • synonyms

    • @ref: 20215
    • synonym: Leuconostoc ficulneum

@ref: 5114

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Leuconostocaceae

genus: Fructobacillus

species: Fructobacillus ficulneus

full scientific name: Fructobacillus ficulneus (Antunes et al. 2002) Endo and Okada 2008

strain designation: FS-1

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5114MRS MEDIUM (DSMZ Medium 11), + 1% fructoseyeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium11.pdf
40712MEDIUM 40- for Lactobacillus and LeuconostocyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)

culture temp

@refgrowthtypetemperaturerange
5114positivegrowth30mesophilic
40712positivegrowth30mesophilic

Physiology and metabolism

murein

  • @ref: 5114
  • murein short key: A11.04
  • type: A3alpha L-Lys-L-Ala

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
5114-----------++-----+------------++-------+------+--

Isolation, sampling and environmental information

isolation

  • @ref: 5114
  • sample type: ripe fig
  • country: Portugal
  • origin.country: PRT
  • continent: Europe

isolation source categories

  • Cat1: #Host Body-Site
  • Cat2: #Plant
  • Cat3: #Fruit (Seed)

Safety information

risk assessment

  • @ref: 5114
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 5114
  • description: Leuconostoc ficulneus 16S ribosomal RNA gene, partial sequence
  • accession: AF360736
  • length: 1475
  • database: ena
  • NCBI tax ID: 157463

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Fructobacillus ficulneus JCM 12225GCA_001047075scaffoldncbi157463
66792Fructobacillus ficulneus strain JCM 12225157463.3wgspatric157463

GC content

  • @ref: 5114
  • GC-content: 43.4
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 5114

culture collection no.: DSM 13613, JCM 12225, LMG 21928, NRRL B-23447

straininfo link

@refpassport
20218http://www.straininfo.net/strains/302875
20218http://www.straininfo.net/strains/478201
20218http://www.straininfo.net/strains/380948
20218http://www.straininfo.net/strains/302877

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5114Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13613)https://www.dsmz.de/collection/catalogue/details/culture/DSM-13613
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40712Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5045
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)