Strain identifier

BacDive ID: 6860

Type strain: Yes

Species: Periweissella beninensis

Strain Designation: 2L24P13

Strain history: DSM 22752 <-- U. Schillinger 2L24P13 <-- S. W. Padonou.

NCBI tax ID(s): 504936 (species)

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General

@ref: 16494

BacDive-ID: 6860

DSM-Number: 22752

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, motile, ovoid-shaped

description: Periweissella beninensis 2L24P13 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from fermented cassava.

NCBI tax id

  • NCBI tax id: 504936
  • Matching level: species

strain history

@refhistory
16494<- U. Schillinger, Max Rubner-Inst. (MRI), Federal Res. Inst. Nutrition and Food, Karlsruhe, Germany; 2L24P13 <- S.W. Padonou, Université de Abomey-Calavi, Cotonou, Benin
67770DSM 22752 <-- U. Schillinger 2L24P13 <-- S. W. Padonou.

doi: 10.13145/bacdive6860.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Periweissella
  • species: Periweissella beninensis
  • full scientific name: Periweissella beninensis (Padonou et al. 2010) Bello et al. 2022

  • synonyms

    • @ref: 20215
    • synonym: Weissella beninensis

@ref: 16494

domain: Bacteria

phylum: Bacillota

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Periweissella

species: Periweissella beninensis

full scientific name: Periweissella beninensis (Padonou et. al. 2010) Bello et al. 2022

strain designation: 2L24P13

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
29498positive0.9-1.5 µm0.7-0.9 µmovoid-shapedyes
69480positive100

pigmentation

  • @ref: 29498
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 16494
  • name: MRS MEDIUM (DSMZ Medium 11)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/11
  • composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16494positivegrowth30mesophilic
29498positivegrowth15psychrophilic
29498positiveoptimum15psychrophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
29498positivegrowth3.9-8acidophile
29498positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
16494microaerophile
29498anaerobe

spore formation

@refspore formationconfidence
29498no
69481no100
69480no99.998

halophily

@refsaltgrowthtested relationconcentration
29498NaClpositivegrowth4 %
29498NaClpositiveoptimum4 %

observation

  • @ref: 29498
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2949822599arabinose+carbon source
2949828757fructose+carbon source
2949828260galactose+carbon source
2949817234glucose+carbon source
2949817716lactose+carbon source
2949817306maltose+carbon source
2949829864mannitol+carbon source
2949837684mannose+carbon source
2949828053melibiose+carbon source
29498506227N-acetylglucosamine+carbon source
2949816634raffinose+carbon source
2949830911sorbitol+carbon source
2949817992sucrose+carbon source
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose+builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose+builds acid from
6837128053melibiose+builds acid from
6837117716lactose+builds acid from
6837117306maltose+builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
16494----------++++--------------++++---+--------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
16494fermented cassavaKetouBeninBENAfrica
67770Cassava fermentations in KetouBeninBENAfrica

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production
#Host#Plants#Shrub (Scrub)

taxonmaps

  • @ref: 69479
  • File name: preview.99_184631.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_155;96_41227;97_52625;98_69498;99_184631&stattab=map
  • Last taxonomy: Weissella beninensis
  • 16S sequence: LC521979
  • Sequence Identity:
  • Total samples: 699
  • soil counts: 35
  • aquatic counts: 150
  • animal counts: 452
  • plant counts: 62

Safety information

risk assessment

  • @ref: 16494
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
16494Weissella beninensis strain 2L24P13 16S ribosomal RNA gene, partial sequenceEU4394351483ena504936
67770Weissella beninensis JCM 18047 gene for 16S rRNA, partial sequenceLC5219791514ena504936

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Periweissella beninensis DSM 22752GCA_016908275contigncbi504936
66792Weissella beninensis strain DSM 22752504936.3wgspatric504936
66792Weissella beninensis DSM 227522901094396draftimg504936
66792Periweissella beninensis LMG 25373GCA_023701865contigncbi504936

GC content

@refGC-contentmethod
1649437fluorimetric
2949837.0-37.2
6777037thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveyes91.958yes
anaerobicno92.901no
halophileyes94.029no
spore-formingno95.308yes
glucose-utilyes88.924yes
aerobicno93.522no
motileno66.398no
thermophileno96.971no
flagellatedno93.463no
glucose-fermentyes89.109no

External links

@ref: 16494

culture collection no.: DSM 22752, JCM 18047, LMG 25373

straininfo link

  • @ref: 76325
  • straininfo: 363711

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19897612Weissella beninensis sp. nov., a motile lactic acid bacterium from submerged cassava fermentations, and emended description of the genus Weissella.Padonou SW, Schillinger U, Nielsen DS, Franz CMAP, Hansen M, Hounhouigan JD, Nago MC, Jakobsen MInt J Syst Evol Microbiol10.1099/ijs.0.014332-02009DNA, Bacterial/genetics, DNA, Ribosomal/genetics, *Fermentation, Lactic Acid/*metabolism, Leuconostocaceae/*classification/genetics/*isolation & purification/metabolism, Manihot/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/geneticsMetabolism
Phylogeny31246166Weissella cryptocerci sp. nov., isolated from gut of the insect Cryptocercus kyebangensis.Heo J, Hamada M, Cho H, Weon HY, Kim JS, Hong SB, Kim SJ, Kwon SWInt J Syst Evol Microbiol10.1099/ijsem.0.0035642019Animals, Bacterial Typing Techniques, Base Composition, Cockroaches/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gastrointestinal Tract/*microbiology, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Weissella/*classification/isolation & purificationTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16494Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22752)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22752
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29498Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2589828776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
76325Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID363711.1StrainInfo: A central database for resolving microbial strain identifiers