Strain identifier
BacDive ID: 686
Type strain: 
Species: Bacillus licheniformis
Strain Designation: Tracy I
Strain history: <- J.H. Haavik <- ATCC <- B.A. Johnson <- F.O. Meleney, Tracy I
NCBI tax ID(s): 1402 (species)
version 8.1 (current version)
General
@ref: 315
BacDive-ID: 686
DSM-Number: 603
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, human pathogen
description: Bacillus licheniformis Tracy I is a mesophilic human pathogen that was isolated from septic wound.
NCBI tax id
- NCBI tax id: 1402
- Matching level: species
strain history
- @ref: 315
- history: <- J.H. Haavik <- ATCC <- B.A. Johnson <- F.O. Meleney, Tracy I
doi: 10.13145/bacdive686.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus licheniformis
- full scientific name: Bacillus licheniformis (Weigmann 1898) Chester 1901 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Clostridium licheniforme
@ref: 315
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus licheniformis
full scientific name: Bacillus licheniformis (Weigmann 1898) Chester 1901
strain designation: Tracy I
type strain: no
Culture and growth conditions
culture medium
- @ref: 315
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 315
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
compound production
- @ref: 315
- compound: bacitracin
Isolation, sampling and environmental information
isolation
- @ref: 315
- sample type: septic wound
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Disease | |
| #Host Body-Site | #Other | #Wound |
taxonmaps
- @ref: 69479
- File name: preview.99_138.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_17;97_17;98_122;99_138&stattab=map
- Last taxonomy: Bacillus licheniformis
- 16S sequence: AB680254
- Sequence Identity:
- Total samples: 2539
- soil counts: 475
- aquatic counts: 736
- animal counts: 1197
- plant counts: 131
Safety information
risk assessment
- @ref: 315
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Bacillus licheniformis gene for 16S rRNA, partial sequence, strain: NBRC 12199
- accession: AB680254
- length: 1475
- database: ena
- NCBI tax ID: 1402
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bacillus licheniformis ATCC 10716 | 2563366673 | draft | img | 1402 |
| 66792 | Bacillus licheniformis ATCC 10716 | 651716591 | draft | img | 1402 |
External links
@ref: 315
culture collection no.: DSM 603, ATCC 10716, CCM 2181, IFO 12199, NBRC 12199, NCIB 8874, FDA BT1
straininfo link
- @ref: 70361
- straininfo: 13584
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 34361 | Application of oxygen-enriched aeration in the production of bacitracin by Bacillus licheniformis. | Flickinger MC, Perlman D | Antimicrob Agents Chemother | 10.1128/AAC.15.2.282 | 1979 | Bacillus/drug effects/*metabolism, Bacitracin/analysis/*biosynthesis, Carbon Dioxide/analysis, Culture Media, Fermentation, Hydrogen-Ion Concentration, Lactates/metabolism, Oxygen/analysis/*pharmacology, Spores, Bacterial/drug effects, Sucrose/metabolism | Pathogenicity |
| Cultivation | 468080 | Amino acid control mechanism for bacitracin formation by Bacillus licheniformis. | Haavik HI | Folia Microbiol (Praha) | 10.1007/BF02926454 | 1979 | Amino Acids/*pharmacology, Bacillus/drug effects/growth & development/*metabolism, Bacitracin/*biosynthesis, Culture Media | Pathogenicity |
| Pathogenicity | 677878 | Survival of bacillus licheniformis on human skin. | Bibel DJ, Lovell DJ, Smiljanic RJ | Appl Environ Microbiol | 10.1128/aem.35.6.1128-1135.1978 | 1978 | Adult, Bacillus/*growth & development/metabolism, Bacitracin/biosynthesis, Female, Humans, Male, Middle Aged, Mutation, Skin/*microbiology, Spores, Bacterial/growth & development, Time Factors | Metabolism |
| Pathogenicity | 677879 | Interactions of Bacillus licheniformis ATCC 10716 and normal flora of human skin. | Bibel DJ, Smiljanic RJ, Lovell DJ | Appl Environ Microbiol | 10.1128/aem.35.6.1136-1144.1978 | 1978 | Adult, Antibiosis, Bacillus/*growth & development/metabolism, Bacitracin/biosynthesis, Bacteria/*growth & development, Corynebacterium/growth & development, Drug Resistance, Microbial, Female, Humans, Male, Micrococcus/growth & development, Middle Aged, Mutation, Skin/*microbiology, Species Specificity, Spores, Bacterial/growth & development, Staphylococcus/growth & development | Phylogeny |
| Biotechnology | 696324 | Bacitracin production by the high-yielding mutant Bacillus licheniformis strain AL: stimulatory effect of L-leucine. | Haavik HI, Vessia B | Acta Pathol Microbiol Scand B | 10.1111/j.1699-0463.1978.tb00011.x | 1978 | Amino Acids/pharmacology, Bacillus/growth & development/*metabolism, Bacitracin/*biosynthesis, Culture Media, Leucine/*pharmacology, Stimulation, Chemical | Cultivation |
| Metabolism | 998253 | Possible functions of peptide antibiotics during growth of producer organisms: bacitracin and metal (II) ion transport. | Haavik HI | Acta Pathol Microbiol Scand B | 10.1111/j.1699-0463.1976.tb01913.x | 1976 | Bacillus/*drug effects/growth & development/metabolism, Bacitracin/*pharmacology, Biological Transport/drug effects, Cadmium/metabolism, Calcium/metabolism, Cobalt/pharmacology, Copper/metabolism, Iron/metabolism, Magnesium/metabolism, Manganese/pharmacology, Nickel/metabolism, Zinc/pharmacology | Pathogenicity |
| Metabolism | 1060363 | Bacitracin production by the neotype; bacillus licheniformis ATCC 14580. | Haavik HI | Acta Pathol Microbiol Scand Suppl | 10.1111/j.1699-0463.1975.tb00135.x | 1975 | Bacillus/growth & development/*metabolism, Bacitracin/*biosynthesis/metabolism, Magnesium/pharmacology, Stimulation, Chemical, Time Factors | Biotechnology |
| Enzymology | 1204607 | Enzyme-bound intermediates in the biosynthesis of bacitracin. | Froyshov O | Eur J Biochem | 10.1111/j.1432-1033.1975.tb02442.x | 1975 | Amino Acids/analysis, Bacillus/*enzymology, Bacitracin/*biosynthesis, Isoleucine/metabolism, Kinetics, Multienzyme Complexes/*metabolism, Peptide Synthases/*metabolism | Metabolism |
| Metabolism | 2306463 | Variation of the surface properties of Bacillus licheniformis according to age, temperature and aeration. | Herben PF, Mozes N, Rouxhet PG | Biochim Biophys Acta | 10.1016/0304-4165(90)90010-t | 1990 | *Bacillus/growth & development, Oxygen/*metabolism, Spectrum Analysis, Temperature | |
| Enzymology | 2646292 | Molecular cloning and expression in Escherichia coli of the Bacillus licheniformis bacitracin synthetase 2 gene. | Ishihara H, Hara N, Iwabuchi T | J Bacteriol | 10.1128/jb.171.3.1705-1711.1989 | 1989 | Bacillus/enzymology/*genetics, Blotting, Southern, Blotting, Western, *Cloning, Molecular, Escherichia coli/*genetics, *Genes, *Genes, Bacterial, Molecular Weight, Multienzyme Complexes/biosynthesis/*genetics/metabolism, Nucleic Acid Hybridization, Peptide Synthases/biosynthesis/*genetics/metabolism, Recombinant Proteins/biosynthesis/metabolism, Restriction Mapping, Transduction, Genetic | Metabolism |
| Enzymology | 3031430 | Physical mapping of LP51 and LP52 prophages of lysogenic strains of Bacillus licheniformis. | Doskocil J, Forstova J, Storchova H | Mol Gen Genet | 10.1007/BF00338093 | 1986 | Bacillus/*genetics, Bacteriophages/*genetics, DNA Restriction Enzymes, DNA, Viral/genetics, *Genes, Viral, Lysogeny | |
| Enzymology | 3446746 | Genetic mapping of the bacitracin synthetase gene(s) in Bacillus licheniformis. | Podlesek Z, Grabnar M | J Gen Microbiol | 10.1099/00221287-133-11-3093 | 1987 | Bacillus/enzymology/*genetics/ultrastructure, *Chromosome Mapping, Chromosomes, Bacterial, *Genes, Bacterial, Multienzyme Complexes/*genetics, Mutation, Peptide Synthases/*genetics, Transduction, Genetic | |
| Metabolism | 6682818 | [Participation of temperate phages LP52 and BL20 in the control of bacitracin synthesis in Bacillus licheniformis]. | Lukin AA, Rozov AN | Genetika | 1983 | Bacillus/genetics/*metabolism, Bacitracin/*biosynthesis, Bacteriophages/genetics/*metabolism, Lysogeny, Transduction, Genetic, Transformation, Bacterial | ||
| Phenotype | 7125801 | Phenotypic variations in re-lysogenization of Bacillus licheniformis with temperate phage. | Imanaka T, Uchida K, Aiba S | Arch Microbiol | 10.1007/BF00690821 | 1982 | Bacillus/*genetics, Bacitracin/biosynthesis, Bacteriophages/*physiology, Genetic Variation, *Lysogeny, Phenotype | |
| Metabolism | 7294756 | [Effect of auxotrophic mutations on the bacitracin production level in Bacillus licheniformis]. | Zvenigorodskii VI, Bugaichuk IuD, Kuzovnikova TA, Lukin AA, Zhdanov VG | Antibiotiki | 1981 | Amino Acids/metabolism, Bacillus/drug effects/*metabolism/radiation effects, Bacitracin/*biosynthesis, Culture Media, Methylnitrosourea/pharmacology, *Mutation, Phenotype, Ultraviolet Rays | Cultivation | |
| Metabolism | 7391816 | Regulation of bacitracin synthetase by divalent metal ions in Bacillus licheniformis. | Froyshov O, Mathiesen A, Haavik HI | J Gen Microbiol | 10.1099/00221287-117-1-163 | 1980 | Amino Acids/metabolism, Bacillus/*enzymology, Bacitracin/pharmacology, Cobalt/pharmacology, Enzyme Activation/drug effects, Feedback, Iron/pharmacology, Magnesium/pharmacology, Manganese/pharmacology, Metals/*pharmacology, Multienzyme Complexes/antagonists & inhibitors/*metabolism, Peptide Synthases/antagonists & inhibitors/*metabolism | Enzymology |
| 8029327 | Conjugal transfer of transposon Tn916 from Enterococcus faecalis to Bacillus licheniformis. | Herzog-Velikonja B, Podlesek Z, Grabnar M | Plasmid | 10.1006/plas.1994.1021 | 1994 | Bacillus/*genetics, Blotting, Southern, Chromosomes, Bacterial, *Conjugation, Genetic, *DNA Transposable Elements, DNA, Bacterial, Enterococcus faecalis/*genetics | ||
| Enzymology | 9003455 | Nucleotide sequence of the Bacillus licheniformis ATCC 10716 dat gene and comparison of the predicted amino acid sequence with those of other bacterial species. | Taylor PP, Fotheringham IG | Biochim Biophys Acta | 10.1016/s0167-4781(96)00204-7 | 1997 | Amino Acid Sequence, Bacillus/*enzymology/*genetics, Bacillus subtilis/enzymology/genetics, Base Sequence, D-Alanine Transaminase, Escherichia coli/enzymology/genetics, Evolution, Molecular, *Genes, Bacterial, Molecular Sequence Data, Phylogeny, Sequence Homology, Amino Acid, Transaminases/biosynthesis/chemistry/*genetics | Genetics |
| Metabolism | 9427658 | The bacitracin biosynthesis operon of Bacillus licheniformis ATCC 10716: molecular characterization of three multi-modular peptide synthetases. | Konz D, Klens A, Schorgendorfer K, Marahiel MA | Chem Biol | 10.1016/s1074-5521(97)90301-x | 1997 | Amino Acid Sequence, Bacillus/*genetics/*metabolism, Bacitracin/*biosynthesis, Cloning, Molecular, DNA, Bacterial/analysis/metabolism, Escherichia coli/genetics, Genes, Bacterial, Molecular Sequence Data, Operon/genetics, Peptide Synthases/*genetics/*metabolism, Polymerase Chain Reaction, Siderophores/metabolism | Enzymology |
| 9782506 | Construction of a single-copy integration vector and its use to study gene expression in Bacillus licheniformis. | Tran LP, Szabo L, Orosz L, Sik T, Holczinger A | Microbiology (Reading) | 10.1099/00221287-144-9-2573 | 1998 | Artificial Gene Fusion, Bacillus/*genetics, Escherichia coli/genetics, Gene Expression Regulation, Bacterial, *Genes, Bacterial, *Genetic Vectors, Kanamycin Resistance/genetics, Lac Operon, Micrococcus/genetics, Multienzyme Complexes/genetics, Peptide Synthases/genetics, Plasmids/genetics, Promoter Regions, Genetic, Recombination, Genetic, Replication Origin | ||
| Metabolism | 9864322 | Molecular and biochemical characterization of the protein template controlling biosynthesis of the lipopeptide lichenysin. | Konz D, Doekel S, Marahiel MA | J Bacteriol | 10.1128/JB.181.1.133-140.1999 | 1999 | Amino Acid Sequence, Amino Acid Substitution, Bacillus/*genetics/*metabolism, Base Sequence, Cloning, Molecular, DNA Primers/genetics, Escherichia coli/genetics, Gene Expression, Genes, Bacterial, Ligases/genetics/metabolism, Lipoproteins/*biosynthesis/chemistry/genetics, Molecular Sequence Data, Open Reading Frames, Operon, Peptides, Cyclic/*biosynthesis/chemistry/genetics, Phylogeny, Substrate Specificity | Enzymology |
| Phylogeny | 10594231 | Genetic characterization of a new thermotolerant Bacillus licheniformis strain. | Mendo SA, Henriques IS, Correia AC, Duarte JM | Curr Microbiol | 10.1007/s002849910028 | 2000 | Bacillus/genetics/growth & development/*isolation & purification, Base Composition, DNA, Bacterial/analysis/genetics, DNA, Ribosomal/genetics, Drug Resistance, Microbial, Electrophoresis, Gel, Pulsed-Field, Hot Temperature, Metals, Heavy/pharmacology, Nucleic Acid Hybridization, Plasmids/genetics, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics | Enzymology |
| Metabolism | 11389719 | The two-component regulatory system BacRS is associated with bacitracin 'self-resistance' of Bacillus licheniformis ATCC 10716. | Neumuller AM, Konz D, Marahiel MA | Eur J Biochem | 10.1046/j.1432-1327.2001.02203.x | 2001 | ATP-Binding Cassette Transporters/genetics, Bacillus/genetics/growth & development/*metabolism, Bacitracin/*biosynthesis/chemistry/pharmacology, Blotting, Western, Colony-Forming Units Assay, Drug Resistance/genetics, *Genes, Bacterial, Molecular Structure, Multigene Family, Mutation, Plasmids | |
| Phylogeny | 12029522 | Distribution and variation of bacitracin synthetase gene sequences in laboratory stock strains of Bacillus licheniformis. | Ishihara H, Takoh M, Nishibayashi R, Sato A | Curr Microbiol | 10.1007/s00284-001-0041-5 | 2002 | Anti-Bacterial Agents/metabolism, Bacillus/*classification/*enzymology/genetics/isolation & purification, Bacitracin/isolation & purification, Blotting, Southern, Culture Media, DNA, Bacterial/analysis, Drug Resistance, Erythromycin/metabolism, Genes, Bacterial, Genetic Variation, Multienzyme Complexes/*genetics/isolation & purification, Nucleic Acid Hybridization, Peptide Synthases/*genetics/isolation & purification, Sequence Analysis, DNA/methods | Enzymology |
| 18627898 | Inducible bacteriophages of Bacillus licheniformis ATCC 10716. | Imanaka T, Uchida K, Tateishi M, Aiba S | Virology | 10.1016/0042-6822(79)90425-2 | 1979 | |||
| Metabolism | 21554139 | Fibrinolytic and antiplatelet aggregation properties of a recombinant Cheonggukjang kinase. | Radnaabazar C, Park CM, Kim JH, Cha J, Song YS | J Med Food | 10.1089/jmf.2010.1233 | 2011 | Animals, Bacillus subtilis/*enzymology/genetics, Bacterial Proteins/genetics/metabolism/*pharmacology, Female, Fibrinolytic Agents/metabolism/*pharmacology, Humans, Male, Mice, Mice, Inbred ICR, Platelet Aggregation/drug effects, Platelet Aggregation Inhibitors/metabolism/*pharmacology, Protein Kinases/genetics/metabolism/*pharmacology, Rats, Rats, Sprague-Dawley, Recombinant Proteins/genetics/metabolism/pharmacology, Soybeans/*microbiology, Thromboembolism/drug therapy/physiopathology | Pathogenicity |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 315 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 603) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-603 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 70361 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID13584.1 | StrainInfo: A central database for resolving microbial strain identifiers |