Strain identifier
BacDive ID: 6858
Type strain:
Species: Periweissella ghanensis
Strain Designation: 215
Strain history: <- L. De Vuyst <- N. Camu, Vrije Univ. Brussels, Belgium; 215
NCBI tax ID(s): 467997 (species)
General
@ref: 8395
BacDive-ID: 6858
DSM-Number: 19935
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, rod-shaped
description: Periweissella ghanensis 215 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from fermented cocoa beans.
NCBI tax id
- NCBI tax id: 467997
- Matching level: species
strain history
- @ref: 8395
- history: <- L. De Vuyst <- N. Camu, Vrije Univ. Brussels, Belgium; 215
doi: 10.13145/bacdive6858.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Periweissella
- species: Periweissella ghanensis
- full scientific name: Periweissella ghanensis (De Bruyne et al. 2008) Bello et al. 2022
synonyms
- @ref: 20215
- synonym: Weissella ghanensis
@ref: 8395
domain: Bacteria
phylum: Bacillota
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Periweissella
species: Periweissella ghanensis
full scientific name: Periweissella ghanensis (De Bruyne et al. 2008) Bello et al. 2022
strain designation: 215
type strain: yes
Morphology
cell morphology
- @ref: 32655
- gram stain: positive
- cell length: 02-04 µm
- cell width: 1 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 32655
- production: yes
Culture and growth conditions
culture medium
- @ref: 8395
- name: PEDIOCOCCUS DAMNOSUS MEDIUM (DSMZ Medium 231)
- growth: yes
- link: https://mediadive.dsmz.de/medium/231
- composition: Name: PEDIOCOCCUS DAMNOSUS MEDIUM (DSMZ Medium 231) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Yeast extract 5.0 g/l Na-acetate 5.0 g/l K2HPO4 2.0 g/l (NH4)3 citrate 2.0 g/l Tween 80 1.0 g/l Cysteine hydrochloride 0.5 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8395 | positive | growth | 30 | mesophilic |
32655 | positive | growth | 15-37 | |
32655 | positive | optimum | 15-37 |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
32655 | positive | growth | 3.9 | acidophile |
32655 | positive | optimum | 3.9 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
8395 | microaerophile |
32655 | facultative anaerobe |
spore formation
- @ref: 32655
- spore formation: no
observation
- @ref: 32655
- observation: aggregates in chains
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
32655 | 17057 | cellobiose | + | carbon source |
32655 | 28757 | fructose | + | carbon source |
32655 | 17234 | glucose | + | carbon source |
32655 | 17306 | maltose | + | carbon source |
32655 | 37684 | mannose | + | carbon source |
32655 | 506227 | N-acetylglucosamine | + | carbon source |
32655 | 17814 | salicin | + | carbon source |
32655 | 27082 | trehalose | + | carbon source |
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | 24265 | gluconate | - | builds acid from |
68371 | 18403 | L-arabitol | - | builds acid from |
68371 | 18333 | D-arabitol | - | builds acid from |
68371 | 18287 | L-fucose | - | builds acid from |
68371 | 28847 | D-fucose | - | builds acid from |
68371 | 16443 | D-tagatose | - | builds acid from |
68371 | 62318 | D-lyxose | - | builds acid from |
68371 | 32528 | turanose | - | builds acid from |
68371 | 28066 | gentiobiose | + | builds acid from |
68371 | 17151 | xylitol | - | builds acid from |
68371 | 28087 | glycogen | - | builds acid from |
68371 | 28017 | starch | - | builds acid from |
68371 | 16634 | raffinose | - | builds acid from |
68371 | 6731 | melezitose | - | builds acid from |
68371 | 15443 | inulin | - | builds acid from |
68371 | 27082 | trehalose | + | builds acid from |
68371 | 17992 | sucrose | + | builds acid from |
68371 | 28053 | melibiose | - | builds acid from |
68371 | 17716 | lactose | - | builds acid from |
68371 | 17306 | maltose | + | builds acid from |
68371 | 17057 | cellobiose | + | builds acid from |
68371 | 17814 | salicin | - | builds acid from |
68371 | 4853 | esculin | + | builds acid from |
68371 | 59640 | N-acetylglucosamine | + | builds acid from |
68371 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
68371 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
68371 | 17924 | D-sorbitol | - | builds acid from |
68371 | 16899 | D-mannitol | - | builds acid from |
68371 | 17268 | myo-inositol | - | builds acid from |
68371 | 16813 | galactitol | - | builds acid from |
68371 | 62345 | L-rhamnose | - | builds acid from |
68371 | 17266 | L-sorbose | - | builds acid from |
68371 | 16024 | D-mannose | + | builds acid from |
68371 | 15824 | D-fructose | + | builds acid from |
68371 | 17634 | D-glucose | + | builds acid from |
68371 | 12936 | D-galactose | - | builds acid from |
68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
68371 | 15963 | ribitol | - | builds acid from |
68371 | 65328 | L-xylose | - | builds acid from |
68371 | 65327 | D-xylose | - | builds acid from |
68371 | 16988 | D-ribose | - | builds acid from |
68371 | 30849 | L-arabinose | - | builds acid from |
68371 | 17108 | D-arabinose | - | builds acid from |
68371 | 17113 | erythritol | - | builds acid from |
68371 | 17754 | glycerol | - | builds acid from |
API 50CHac
@ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
8395 | - | - | - | - | - | - | - | - | - | - | - | + | + | + | - | - | - | - | - | - | - | - | + | +/- | +/- | + | - | + | + | - | - | + | + | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 8395
- sample type: fermented cocoa beans
- geographic location: Ghana
- country: Ghana
- origin.country: GHA
- continent: Africa
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Food production | |
#Host Body-Site | #Plant | #Fruit (Seed) |
taxonmaps
- @ref: 69479
- File name: preview.99_101836.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_155;96_41227;97_52625;98_69498;99_101836&stattab=map
- Last taxonomy: Weissella
- 16S sequence: AM882997
- Sequence Identity:
- Total samples: 2186
- soil counts: 139
- aquatic counts: 291
- animal counts: 1457
- plant counts: 299
Safety information
risk assessment
- @ref: 8395
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 8395
- description: Weissella ghanensis partial 16S rRNA gene, type strain LMG 24286T
- accession: AM882997
- length: 1541
- database: ena
- NCBI tax ID: 467997
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Periweissella ghanensis DSM 19935 | GCA_023657365 | contig | ncbi | 467997 |
66792 | Periweissella ghanensis LMG 24286 substr. LMG 24286 | GCA_918814755 | contig | ncbi | 467997 |
66792 | Weissella ghanensis strain LMG 24286 | 467997.5 | wgs | patric | 467997 |
GC content
- @ref: 8395
- GC-content: 40
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
gram-positive | yes | 93.3 | yes |
anaerobic | no | 86.092 | no |
halophile | yes | 80.518 | no |
spore-forming | no | 90.254 | no |
glucose-util | yes | 88.108 | yes |
aerobic | no | 93.907 | yes |
flagellated | no | 92.782 | yes |
thermophile | no | 99.204 | yes |
motile | no | 80.816 | yes |
glucose-ferment | yes | 86.158 | no |
External links
@ref: 8395
culture collection no.: DSM 19935, LMG 24286
straininfo link
- @ref: 76323
- straininfo: 311007
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 19060047 | Weissella ghanensis sp. nov., isolated from a Ghanaian cocoa fermentation. | De Bruyne K, Camu N, Lefebvre K, De Vuyst L, Vandamme P | Int J Syst Evol Microbiol | 10.1099/ijs.0.65853-0 | 2008 | Cacao/*metabolism/*microbiology, *Fermentation, Ghana, Lactobacillaceae/*classification/genetics/isolation & purification/*physiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S, Species Specificity | Genetics |
Phylogeny | 19801391 | Weissella fabaria sp. nov., from a Ghanaian cocoa fermentation. | De Bruyne K, Camu N, De Vuyst L, Vandamme P | Int J Syst Evol Microbiol | 10.1099/ijs.0.019323-0 | 2009 | Bacterial Proteins/genetics, Cacao/*microbiology, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, *Fermentation, Leuconostocaceae/classification/genetics/*isolation & purification/*metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics | Metabolism |
Phylogeny | 19897612 | Weissella beninensis sp. nov., a motile lactic acid bacterium from submerged cassava fermentations, and emended description of the genus Weissella. | Padonou SW, Schillinger U, Nielsen DS, Franz CMAP, Hansen M, Hounhouigan JD, Nago MC, Jakobsen M | Int J Syst Evol Microbiol | 10.1099/ijs.0.014332-0 | 2009 | DNA, Bacterial/genetics, DNA, Ribosomal/genetics, *Fermentation, Lactic Acid/*metabolism, Leuconostocaceae/*classification/genetics/*isolation & purification/metabolism, Manihot/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics | Metabolism |
Phylogeny | 31246166 | Weissella cryptocerci sp. nov., isolated from gut of the insect Cryptocercus kyebangensis. | Heo J, Hamada M, Cho H, Weon HY, Kim JS, Hong SB, Kim SJ, Kwon SW | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003564 | 2019 | Animals, Bacterial Typing Techniques, Base Composition, Cockroaches/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gastrointestinal Tract/*microbiology, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Weissella/*classification/isolation & purification | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
8395 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19935) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19935 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
32655 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28866 | 28776041 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68371 | Automatically annotated from API 50CH acid | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
76323 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID311007.1 | StrainInfo: A central database for resolving microbial strain identifiers |