Strain identifier

BacDive ID: 6858

Type strain: Yes

Species: Periweissella ghanensis

Strain Designation: 215

Strain history: <- L. De Vuyst <- N. Camu, Vrije Univ. Brussels, Belgium; 215

NCBI tax ID(s): 467997 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8395

BacDive-ID: 6858

DSM-Number: 19935

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, rod-shaped

description: Periweissella ghanensis 215 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from fermented cocoa beans.

NCBI tax id

  • NCBI tax id: 467997
  • Matching level: species

strain history

  • @ref: 8395
  • history: <- L. De Vuyst <- N. Camu, Vrije Univ. Brussels, Belgium; 215

doi: 10.13145/bacdive6858.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Periweissella
  • species: Periweissella ghanensis
  • full scientific name: Periweissella ghanensis (De Bruyne et al. 2008) Bello et al. 2022
  • synonyms

    • @ref: 20215
    • synonym: Weissella ghanensis

@ref: 8395

domain: Bacteria

phylum: Bacillota

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Periweissella

species: Periweissella ghanensis

full scientific name: Periweissella ghanensis (De Bruyne et al. 2008) Bello et al. 2022

strain designation: 215

type strain: yes

Morphology

cell morphology

  • @ref: 32655
  • gram stain: positive
  • cell length: 02-04 µm
  • cell width: 1 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 32655
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 8395
  • name: PEDIOCOCCUS DAMNOSUS MEDIUM (DSMZ Medium 231)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/231
  • composition: Name: PEDIOCOCCUS DAMNOSUS MEDIUM (DSMZ Medium 231) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Yeast extract 5.0 g/l Na-acetate 5.0 g/l K2HPO4 2.0 g/l (NH4)3 citrate 2.0 g/l Tween 80 1.0 g/l Cysteine hydrochloride 0.5 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8395positivegrowth30mesophilic
32655positivegrowth15-37
32655positiveoptimum15-37

culture pH

@refabilitytypepHPH range
32655positivegrowth3.9acidophile
32655positiveoptimum3.9

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
8395microaerophile
32655facultative anaerobe

spore formation

  • @ref: 32655
  • spore formation: no

observation

  • @ref: 32655
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3265517057cellobiose+carbon source
3265528757fructose+carbon source
3265517234glucose+carbon source
3265517306maltose+carbon source
3265537684mannose+carbon source
32655506227N-acetylglucosamine+carbon source
3265517814salicin+carbon source
3265527082trehalose+carbon source
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose+builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose+builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose+builds acid from
6837117057cellobiose+builds acid from
6837117814salicin-builds acid from
683714853esculin+builds acid from
6837159640N-acetylglucosamine+builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
8395-----------+++--------++/-+/-+-++--++------+----------

Isolation, sampling and environmental information

isolation

  • @ref: 8395
  • sample type: fermented cocoa beans
  • geographic location: Ghana
  • country: Ghana
  • origin.country: GHA
  • continent: Africa

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production
#Host Body-Site#Plant#Fruit (Seed)

taxonmaps

  • @ref: 69479
  • File name: preview.99_101836.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_155;96_41227;97_52625;98_69498;99_101836&stattab=map
  • Last taxonomy: Weissella
  • 16S sequence: AM882997
  • Sequence Identity:
  • Total samples: 2186
  • soil counts: 139
  • aquatic counts: 291
  • animal counts: 1457
  • plant counts: 299

Safety information

risk assessment

  • @ref: 8395
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8395
  • description: Weissella ghanensis partial 16S rRNA gene, type strain LMG 24286T
  • accession: AM882997
  • length: 1541
  • database: ena
  • NCBI tax ID: 467997

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Periweissella ghanensis DSM 19935GCA_023657365contigncbi467997
66792Periweissella ghanensis LMG 24286 substr. LMG 24286GCA_918814755contigncbi467997
66792Weissella ghanensis strain LMG 24286467997.5wgspatric467997

GC content

  • @ref: 8395
  • GC-content: 40

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveyes93.3yes
anaerobicno86.092no
halophileyes80.518no
spore-formingno90.254no
glucose-utilyes88.108yes
aerobicno93.907yes
flagellatedno92.782yes
thermophileno99.204yes
motileno80.816yes
glucose-fermentyes86.158no

External links

@ref: 8395

culture collection no.: DSM 19935, LMG 24286

straininfo link

  • @ref: 76323
  • straininfo: 311007

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19060047Weissella ghanensis sp. nov., isolated from a Ghanaian cocoa fermentation.De Bruyne K, Camu N, Lefebvre K, De Vuyst L, Vandamme PInt J Syst Evol Microbiol10.1099/ijs.0.65853-02008Cacao/*metabolism/*microbiology, *Fermentation, Ghana, Lactobacillaceae/*classification/genetics/isolation & purification/*physiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S, Species SpecificityGenetics
Phylogeny19801391Weissella fabaria sp. nov., from a Ghanaian cocoa fermentation.De Bruyne K, Camu N, De Vuyst L, Vandamme PInt J Syst Evol Microbiol10.1099/ijs.0.019323-02009Bacterial Proteins/genetics, Cacao/*microbiology, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, *Fermentation, Leuconostocaceae/classification/genetics/*isolation & purification/*metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/geneticsMetabolism
Phylogeny19897612Weissella beninensis sp. nov., a motile lactic acid bacterium from submerged cassava fermentations, and emended description of the genus Weissella.Padonou SW, Schillinger U, Nielsen DS, Franz CMAP, Hansen M, Hounhouigan JD, Nago MC, Jakobsen MInt J Syst Evol Microbiol10.1099/ijs.0.014332-02009DNA, Bacterial/genetics, DNA, Ribosomal/genetics, *Fermentation, Lactic Acid/*metabolism, Leuconostocaceae/*classification/genetics/*isolation & purification/metabolism, Manihot/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/geneticsMetabolism
Phylogeny31246166Weissella cryptocerci sp. nov., isolated from gut of the insect Cryptocercus kyebangensis.Heo J, Hamada M, Cho H, Weon HY, Kim JS, Hong SB, Kim SJ, Kwon SWInt J Syst Evol Microbiol10.1099/ijsem.0.0035642019Animals, Bacterial Typing Techniques, Base Composition, Cockroaches/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gastrointestinal Tract/*microbiology, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Weissella/*classification/isolation & purificationTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
8395Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19935)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19935
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32655Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2886628776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76323Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID311007.1StrainInfo: A central database for resolving microbial strain identifiers