Strain identifier
BacDive ID: 6845
Type strain:
Species: Weissella halotolerans
Strain Designation: G1
Strain history: CIP <- 1987, DSM, Lactobacillus halotolerans <- G. Reuter: strain R61, Lactobacillus viridescens subsp. halotolerans
NCBI tax ID(s): 1123500 (strain), 1615 (species)
General
@ref: 8465
BacDive-ID: 6845
DSM-Number: 20190
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Weissella halotolerans G1 is an anaerobe, mesophilic bacterium that was isolated from sausage.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1123500 | strain |
1615 | species |
strain history
@ref | history |
---|---|
8465 | <- G. Reuter, G1 |
67770 | DSM 20190 <-- G. Reuter 61 ("Lactobacillus viridescens subsp. halotolerans"). |
119830 | CIP <- 1987, DSM, Lactobacillus halotolerans <- G. Reuter: strain R61, Lactobacillus viridescens subsp. halotolerans |
doi: 10.13145/bacdive6845.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Weissella
- species: Weissella halotolerans
- full scientific name: Weissella halotolerans (Kandler et al. 1983 ex Reuter 1970) Collins et al. 1994
synonyms
@ref synonym 20215 Lactobacillus viridescens subsp. halotolerans 20215 Lactobacillus halotolerans
@ref: 8465
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Leuconostocaceae
genus: Weissella
species: Weissella halotolerans
full scientific name: Weissella halotolerans (Kandler et al. 1983) Collins et al. 1994
strain designation: G1
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | no | 97.062 | ||
69480 | 100 | positive | ||
119830 | no | positive | rod-shaped |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
8465 | MRS MEDIUM (DSMZ Medium 11) | yes | https://mediadive.dsmz.de/medium/11 | Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water |
34911 | MEDIUM 40- for Lactobacillus and Leuconostoc | yes | Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g) | |
119830 | CIP Medium 40 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8465 | positive | growth | 30 | mesophilic |
34911 | positive | growth | 30 | mesophilic |
51531 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
119830 | positive | growth | 15-37 | |
119830 | no | growth | 10 | psychrophilic |
119830 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
51531 | anaerobe |
51531 | microaerophile |
119830 | facultative anaerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.996 |
halophily
- @ref: 119830
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-10 %
murein
- @ref: 8465
- murein short key: A11.13
- type: A3alpha L-Lys-L-Ala-L-Ser
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | + | builds acid from | |
68371 | gluconate | + | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | - | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | + | builds acid from | 27082 |
68371 | sucrose | - | builds acid from | 17992 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | - | builds acid from | 17716 |
68371 | maltose | + | builds acid from | 17306 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | salicin | - | builds acid from | 17814 |
68371 | esculin | - | builds acid from | 4853 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | + | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | + | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | + | builds acid from | 16024 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | D-galactose | - | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | + | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
119830 | nitrate | - | reduction | 17632 |
119830 | nitrite | - | reduction | 16301 |
119830 | nitrate | + | respiration | 17632 |
antibiotic resistance
- @ref: 119830
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
- @ref: 119830
- metabolite: polysaccharides
- production: no
metabolite tests
- @ref: 119830
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | + | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | - | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | - | 3.1.3.1 |
119830 | oxidase | - | |
119830 | alcohol dehydrogenase | - | 1.1.1.1 |
119830 | gelatinase | - | |
119830 | caseinase | - | 3.4.21.50 |
119830 | catalase | - | 1.11.1.6 |
119830 | lysine decarboxylase | - | 4.1.1.18 |
119830 | ornithine decarboxylase | - | 4.1.1.17 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 51531 C14:0 2.6 14 51531 C16:0 32 16 51531 C18:0 10.3 18 51531 C16:1 ω7c 4 15.819 51531 C18:1 ω7c /12t/9t 11.3 17.824 51531 C18:1 ω9c 13.8 17.769 51531 C18:2 ω6,9c/C18:0 ANTE 26.1 17.724 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119830 | - | - | + | + | - | - | - | - | - | - | + | + | - | - | + | + | + | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119830 | - | - | - | - | + | - | - | - | - | - | + | + | + | - | - | - | - | +/- | - | - | + | + | - | - | - | - | - | + | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | - |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
8465 | sausage |
51531 | Sausage |
67770 | Sausage meat |
119830 | Food, Sausage |
isolation source categories
- Cat1: #Engineered
- Cat2: #Food production
- Cat3: #Meat
taxonmaps
- @ref: 69479
- File name: preview.99_7977.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_155;96_3692;97_4533;98_5818;99_7977&stattab=map
- Last taxonomy: Weissella halotolerans subclade
- 16S sequence: LC064886
- Sequence Identity:
- Total samples: 1422
- soil counts: 78
- aquatic counts: 68
- animal counts: 1224
- plant counts: 52
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
8465 | 1 | Risk group (German classification) |
119830 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Lactobacillus halotolerans gene for 16S ribosomal RNA, partial sequence | D31691 | 192 | ena | 1615 |
20218 | Weissella halotolerans gene for 16S rRNA, strain:NRIC 1627 | AB022926 | 1480 | ena | 1615 |
67770 | Weissella halotolerans gene for 16S ribosomal RNA, partial sequence, strain: JCM 1114 | LC064886 | 1474 | ena | 1615 |
67770 | L.halotolerans 16S small subunit ribosomal RNA | M23037 | 1529 | ena | 1615 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Weissella halotolerans DSM 20190 | 1123500.3 | wgs | patric | 1123500 |
66792 | Weissella halotolerans DSM 20190 | 1123500.6 | wgs | patric | 1123500 |
66792 | Weissella halotolerans DSM 20190 | 2522572202 | draft | img | 1123500 |
66792 | Weissella halotolerans DSM 20190 | 2690315969 | draft | img | 1123500 |
67770 | Weissella halotolerans DSM 20190 | GCA_000420365 | scaffold | ncbi | 1123500 |
67770 | Weissella halotolerans DSM 20190 | GCA_001436865 | scaffold | ncbi | 1123500 |
GC content
@ref | GC-content |
---|---|
8465 | 44.8 |
67770 | 43.2 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 96.553 | no |
flagellated | no | 99.163 | no |
gram-positive | yes | 96.411 | no |
anaerobic | no | 87.161 | no |
aerobic | no | 95.307 | yes |
halophile | yes | 94.199 | no |
spore-forming | no | 97.243 | no |
glucose-util | yes | 92.752 | no |
thermophile | no | 98.791 | yes |
glucose-ferment | yes | 89.172 | no |
External links
@ref: 8465
culture collection no.: CCUG 33457, LMG 9469, DSM 20190, ATCC 35410, JCM 1114, BCRC 14050, CECT 573, CGMCC 1.2440, CIP 103005, NCIMB 702781, NRIC 1627, VTT E-98965
straininfo link
- @ref: 76310
- straininfo: 3302
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
8465 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20190) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20190 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
34911 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/14753 | ||||
51531 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 33457) | https://www.ccug.se/strain?id=33457 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68371 | Automatically annotated from API 50CH acid | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
76310 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID3302.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
119830 | Curators of the CIP | Collection of Institut Pasteur (CIP 103005) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103005 |