Strain identifier
BacDive ID: 684
Type strain: 
Species: Bacillus licheniformis
Strain Designation: III
Strain history: <- D. Claus, III
NCBI tax ID(s): 1402 (species)
version 8.1 (current version)
General
@ref: 174
BacDive-ID: 684
DSM-Number: 392
keywords: genome sequence, Bacteria, aerobe, spore-forming, mesophilic, motile, human pathogen
description: Bacillus licheniformis III is an aerobe, spore-forming, mesophilic human pathogen that was isolated from field soil.
NCBI tax id
- NCBI tax id: 1402
- Matching level: species
strain history
- @ref: 174
- history: <- D. Claus, III
doi: 10.13145/bacdive684.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus licheniformis
- full scientific name: Bacillus licheniformis (Weigmann 1898) Chester 1901 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Clostridium licheniforme
@ref: 174
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus licheniformis
full scientific name: Bacillus licheniformis (Weigmann 1898) Chester 1901
strain designation: III
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 96.916 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 174
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 174 | positive | growth | 37 | mesophilic |
| 48335 | positive | growth | 30-37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 48335
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 174 | field soil | Rothamsted | United Kingdom | GBR | Europe |
| 48335 | Field soil |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Agriculture | #Field |
| #Environmental | #Terrestrial | #Soil |
Safety information
risk assessment
- @ref: 174
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bacillus paralicheniformis LMG 7561 | GCA_007830855 | scaffold | ncbi | 1648923 |
| 66792 | Bacillus paralicheniformis strain LMG 7561 | 1648923.74 | wgs | patric | 1648923 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | yes | 91.846 | no |
| flagellated | yes | 88.815 | no |
| gram-positive | yes | 88.442 | no |
| anaerobic | no | 98.504 | no |
| aerobic | yes | 84.198 | yes |
| halophile | yes | 71.497 | no |
| spore-forming | yes | 96.548 | no |
| thermophile | no | 98.683 | no |
| glucose-util | yes | 89.339 | no |
| glucose-ferment | no | 86.994 | no |
External links
@ref: 174
culture collection no.: CCUG 26007, LMG 7561, DSM 392
straininfo link
- @ref: 70359
- straininfo: 1134
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 174 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 392) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-392 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 48335 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 26007) | https://www.ccug.se/strain?id=26007 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 70359 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID1134.1 | StrainInfo: A central database for resolving microbial strain identifiers |