Strain identifier

BacDive ID: 6836

Type strain: Yes

Species: Leuconostoc fallax

Strain Designation: G

Strain history: NRIC 0210 <-- DSM 20189 <-- J. Winter <-- K. O. Stetter.

NCBI tax ID(s): 907931 (strain), 1251 (species)

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General

@ref: 8464

BacDive-ID: 6836

DSM-Number: 20189

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Leuconostoc fallax G is a mesophilic bacterium that was isolated from sauerkraut.

NCBI tax id

NCBI tax idMatching level
1251species
907931strain

strain history

@refhistory
8464<- J. Winter <- K.O. Stetter, G
67770NRIC 0210 <-- DSM 20189 <-- J. Winter <-- K. O. Stetter.

doi: 10.13145/bacdive6836.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Leuconostoc
  • species: Leuconostoc fallax
  • full scientific name: Leuconostoc fallax Martinez-Murcia and Collins 1992

@ref: 8464

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Leuconostocaceae

genus: Leuconostoc

species: Leuconostoc fallax

full scientific name: Leuconostoc fallax Martinez-Murcia and Collins 1992

strain designation: G

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no96.984
69480100positive

Culture and growth conditions

culture medium

  • @ref: 8464
  • name: MRS MEDIUM (DSMZ Medium 11)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/11
  • composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8464positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.993

murein

  • @ref: 8464
  • murein short key: A11.05
  • type: A3alpha L-Lys-L-Ala2

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside+builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    49881C14:04.814
    49881C16:043.716
    49881C18:02.518
    49881C16:1 ω7c7.315.819
    49881C18:1 ω7c /12t/9t13.417.824
    49881C18:2 ω6,9c/C18:0 ANTE14.617.724
    49881C19:0 CYCLO ω8c13.718.9
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
8464-----------++-----+--++--------+--------+---------

Isolation, sampling and environmental information

isolation

@refsample type
8464sauerkraut
49881Sauerkraut
67770Pickled cabbage (Sauerkraut)

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Fermented
#Engineered#Food production#Vegetable (incl. Grains)
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_5237.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_22;96_2543;97_3108;98_3904;99_5237&stattab=map
  • Last taxonomy: Leuconostoc fallax subclade
  • 16S sequence: LC096218
  • Sequence Identity:
  • Total samples: 6781
  • soil counts: 233
  • aquatic counts: 687
  • animal counts: 5442
  • plant counts: 419

Safety information

risk assessment

  • @ref: 8464
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Leuconostoc fallax 16S ribosomal RNA gene, partial sequenceAF3607381491ena907931
20218Leuconostoc fallax DNA for 16S ribosomal RNA, strain NRIC 0210AB0232391466ena907931
20218Leuconostoc fallax DNA, 16S-23S rRNA intergenic spacer region, strain: NRIC 0210AB290448384ena907931
67770Leuconostoc fallax gene for 16S ribosomal RNA, partial sequence, strain: JCM 9694LC0962181512ena1251

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Leuconostoc fallax KCTC 3537907931.3wgspatric907931
66792Leuconostoc fallax strain ATCC 7000061251.5wgspatric1251
66792Leuconostoc fallax 6, KCTC 3537651324067draftimg907931
67770Leuconostoc fallax KCTC 3537GCA_000165675contigncbi907931
67770Leuconostoc fallax ATCC 700006GCA_004354645scaffoldncbi1251

GC content

@refGC-contentmethod
846440.1
6777040thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno95.21no
flagellatedno98.443no
gram-positiveyes95.169no
anaerobicno90.77no
halophileyes96.192no
spore-formingno94.361no
thermophileno99.55no
glucose-utilyes85.254no
aerobicno94.407no
glucose-fermentyes84.94no

External links

@ref: 8464

culture collection no.: DSM 20189, ATCC 700006, CCUG 30061, JCM 9694, CCM 4303, CECT 4701, CECT 7087, CGMCC 1.2438, CIP 104855, KCTC 3537, LMG 13177, LMG 18975, NCFB 2796, NCIMB 702796, NRIC 0210, VTT E-98973

straininfo link

  • @ref: 76301
  • straininfo: 7623

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny1718816A phylogenetic analysis of an atypical leuconostoc: description of Leuconostoc fallax sp. nov.Martinez-Murcia AJ, Collins MDFEMS Microbiol Lett10.1016/0378-1097(91)90420-f1991Base Sequence, Lactobacillus/genetics, Leuconostoc/*genetics, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Species SpecificityGenetics
Genetics21075921Genome sequence of Leuconostoc fallax KCTC 3537.Nam SH, Choi SH, Kang A, Kim DW, Kim DS, Kim RN, Kim A, Park HSJ Bacteriol10.1128/JB.01300-102010Base Composition, DNA, Bacterial/*chemistry/*genetics, *Food Microbiology, *Genome, Bacterial, Korea, Leuconostoc/*genetics/isolation & purification, Molecular Sequence Data, Sequence Analysis, DNABiotechnology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8464Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20189)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20189
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
49881Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 30061)https://www.ccug.se/strain?id=30061
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
76301Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID7623.1StrainInfo: A central database for resolving microbial strain identifiers