Strain identifier

BacDive ID: 6833

Type strain: Yes

Species: Leuconostoc pseudomesenteroides

Strain Designation: 39

Strain history: CIP <- 1989, NCFB <- R. Glasgock <- 1955, I.E. Bernstein, Michigan, USA Leuconostoc mesenteroides subsp. mesenteroides

NCBI tax ID(s): 935295 (strain), 33968 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8467

BacDive-ID: 6833

DSM-Number: 20193

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, human pathogen

description: Leuconostoc pseudomesenteroides 39 is a microaerophile, mesophilic human pathogen that was isolated from cane juice.

NCBI tax id

NCBI tax idMatching level
33968species
935295strain

strain history

@refhistory
8467<- ATCC <- R.D. De Moss, 39 (Leuconostoc mesenteroides)
67770NRIC 1777 <-- NCFB 768 <-- R. Glascock <-- I. R. Bernstein.
121993CIP <- 1989, NCFB <- R. Glasgock <- 1955, I.E. Bernstein, Michigan, USA Leuconostoc mesenteroides subsp. mesenteroides

doi: 10.13145/bacdive6833.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Leuconostoc
  • species: Leuconostoc pseudomesenteroides
  • full scientific name: Leuconostoc pseudomesenteroides Farrow et al. 1989

@ref: 8467

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Leuconostocaceae

genus: Leuconostoc

species: Leuconostoc pseudomesenteroides

full scientific name: Leuconostoc pseudomesenteroides Farrow et al. 1989

strain designation: 39

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no97.977
69480100positive
121993nopositiveovoid-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8467MRS MEDIUM (DSMZ Medium 11)yeshttps://mediadive.dsmz.de/medium/11Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
34245MEDIUM 40- for Lactobacillus and LeuconostocyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
121993CIP Medium 40yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40

culture temp

@refgrowthtypetemperaturerange
8467positivegrowth30mesophilic
34245positivegrowth30mesophilic
49882positivegrowth37mesophilic
67770positivegrowth30mesophilic
121993positivegrowth15-37
121993nogrowth10psychrophilic
121993nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
49882microaerophile
121993facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no100

compound production

  • @ref: 8467
  • compound: D(-) lactic acid dehydrogenase

halophily

@refsaltgrowthtested relationconcentration
121993NaClpositivegrowth0-4 %
121993NaClnogrowth6 %
121993NaClnogrowth8 %
121993NaClnogrowth10 %

murein

  • @ref: 8467
  • murein short key: A11.20
  • type: A3alpha L-Lys-L-Ser-L-Ala2

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose+builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose+builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose+builds acid from
6837128053melibiose+builds acid from
6837117306maltose+builds acid from
683714853esculin+builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose+builds acid from
6837116988D-ribose+builds acid from
6837130849L-arabinose+builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
12199316947citrate-carbon source
12199317632nitrate-reduction
12199316301nitrite-reduction
12199317632nitrate+respiration

antibiotic resistance

  • @ref: 121993
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite tests

  • @ref: 121993
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
121993oxidase-
121993alcohol dehydrogenase-1.1.1.1
121993gelatinase-
121993caseinase-3.4.21.50
121993catalase-1.11.1.6
121993lysine decarboxylase-4.1.1.18
121993ornithine decarboxylase-4.1.1.17

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    49882C14:03.614
    49882C16:037.816
    49882C18:08.518
    49882C16:1 ω7c3.315.819
    49882C18:1 ω7c /12t/9t8.517.824
    49882C18:1 ω9c10.917.769
    49882C18:2 ω6,9c/C18:0 ANTE817.724
    49882C19:0 CYCLO ω8c11.618.9
    49882C19:0 CYCLO ω9c6.318.87
    49882Unidentified1.513.236
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121993--+-------++++-+----

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
8467----+++---++++-----------+-++-+++--+----+---------
8467----+++---++++-------++/---+-++++++--+---++--------+
121993---+++----++--------++--++/-+/-+-+++--+---+/-+------+/-+/-+/-

Isolation, sampling and environmental information

isolation

@refsample type
8467cane juice
67770Cane juice
121993Other, Cane juice

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body Product#Plant#Juice (natural)

taxonmaps

  • @ref: 69479
  • File name: preview.99_7198.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_22;96_35;97_36;98_39;99_7198&stattab=map
  • Last taxonomy: Leuconostoc
  • 16S sequence: LC096220
  • Sequence Identity:
  • Total samples: 6954
  • soil counts: 611
  • aquatic counts: 755
  • animal counts: 4597
  • plant counts: 991

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
8467yes, in single cases1Risk group (German classification)
1219931Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Leuconostoc pseudomesenteroides strain ATCC 49371 16S ribosomal RNA gene, partial sequenceKC510251804ena33968
20218Leuconostoc pseudomesenteroides KCTC 3652 strain LMG 11482 16S ribosomal RNA gene, partial sequenceHM4439581432ena935295
20218L.pseudomesenteroides 16S ribosomal RNAX959791334ena33968
20218Leuconostoc pseudomesenteroides DNA for 16S ribosomal RNA, strain NRIC 1777AB0232371448ena33968
20218Leuconostoc pseudomesenteroides DNA, 16S-23S rRNA intergenic spacer region, strain: NRIC 1777AB290443372ena33968
67770Leuconostoc pseudomesenteroides gene for 16S ribosomal RNA, partial sequence, strain: JCM 9696LC0962201490ena33968

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Leuconostoc pseudomesenteroides KCTC 3652 LMG 11482GCA_014634745contigncbi935295
66792Leuconostoc pseudomesenteroides KCTC 3652GCA_000185065contigncbi935295
66792Leuconostoc pseudomesenteroides KCTC 3652935295.4wgspatric935295
66792Leuconostoc pseudomesenteroides KCTC 3652 strain LMG 11482935295.8wgspatric935295
66792Leuconostoc pseudomesenteroides strain FDAARGOS_100333968.66completepatric33968
66792Leuconostoc pseudomesenteroides 39, KCTC 36522547132075draftimg935295
67770Leuconostoc pseudomesenteroides NCDO 768GCA_012396745contigncbi33968
66792Leuconostoc pseudomesenteroides DSM 20193GCA_029823355contigncbi33968

GC content

@refGC-contentmethod
846739.3
6777039.3thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveyes97.37no
anaerobicno92.73yes
halophileyes94.299no
spore-formingno94.404no
glucose-utilyes87.796no
motileno96.033no
flagellatedno97.986no
thermophileno99.786yes
aerobicno95.268yes
glucose-fermentyes90.319no

External links

@ref: 8467

culture collection no.: DSM 20193, ATCC 12291, CCM 2083, DSM 284, NCDO 768, NCIB 8699, CCUG 30063, JCM 9696, ATCC 49371, BCRC 11651, BCRC 16065, CECT 4027, CIP 103316, KCTC 3652, LMG 11482, NCCB 83005, NCFB 768, NCIMB 8699, NRIC 1777, VTT E-98970

straininfo link

  • @ref: 76298
  • straininfo: 3524

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology12560988A zinc-containing mannitol-2-dehydrogenase from Leuconostoc pseudomesenteroides ATCC 12291: purification of the enzyme and cloning of the gene.Hahn G, Kaup B, Bringer-Meyer S, Sahm HArch Microbiol10.1007/s00203-002-0507-22003Alcohol Oxidoreductases/genetics/metabolism, Cloning, Molecular, Electrophoresis, Polyacrylamide Gel/methods, Escherichia coli/genetics/metabolism, Gene Expression, Genes, Bacterial, Leuconostoc/*enzymology, Mannitol Dehydrogenases/*chemistry/*genetics/isolation & purification/metabolism, Molecular Sequence Data, Sequence Alignment, Sequence Analysis, DNA, Zinc/*analysisMetabolism
Enzymology14586579Metabolic engineering of Escherichia coli: construction of an efficient biocatalyst for D-mannitol formation in a whole-cell biotransformation.Kaup B, Bringer-Meyer S, Sahm HAppl Microbiol Biotechnol10.1007/s00253-003-1470-92003Bacterial Proteins/genetics/physiology, Biotechnology/*methods, Biotransformation, Cloning, Molecular, Culture Media, Escherichia coli/*genetics/*metabolism, Fermentation, Formate Dehydrogenases/genetics/physiology, Fructose/*metabolism, Gene Expression, Genes, Bacterial, Hydrogen-Ion Concentration, Leuconostoc/enzymology/genetics, Mannitol/*metabolism, Mannitol Dehydrogenases/genetics/physiology, Mycobacterium/enzymology/genetics, Operon, Oxidation-Reduction, Recombinant Proteins/metabolism, Sodium Hydroxide/metabolism, *Transformation, Bacterial, Zymomonas/genetics/physiologyMetabolism
Metabolism15296170Metabolic engineering of Escherichia coli: construction of an efficient biocatalyst for D-mannitol formation in a whole-cell biotransformation.Kaup B, Bringer-Meyer S, Sahm HCommun Agric Appl Biol Sci2003Biotransformation, Engineering/methods, Escherichia coli/*growth & development/isolation & purification/metabolism, Formate Dehydrogenases/metabolism, Formates/*metabolism, Kinetics, Mannitol/*metabolism, Recombinant Proteins/metabolismEnzymology
Metabolism15707689Improved mannitol production by a random mutant of Leuconostoc pseudomesenteroides.Helanto M, Aarnikunnas J, von Weymarn N, Airaksinen U, Palva A, Leisola MJ Biotechnol10.1016/j.jbiotec.2004.11.0012005Cell Proliferation, Fructokinases/*genetics/*metabolism, Fructose/*metabolism, Genetic Enhancement/*methods, Genetic Variation, Leuconostoc/classification/isolation & purification/*physiology, Mannitol/*metabolism, Mutagenesis, Site-Directed/genetics, Mutation, Protein Engineering/*methods, Recombinant Proteins/metabolismPhylogeny
Enzymology17619232D-mannitol production by resting state whole cell biotrans-formation of D-fructose by heterologous mannitol and formate dehydrogenase gene expression in Bacillus megaterium.Baumchen C, Roth AH, Biedendieck R, Malten M, Follmann M, Sahm H, Bringer-Meyer S, Jahn DBiotechnol J10.1002/biot.2007000552007Bacillus megaterium/genetics/*metabolism, Biotransformation, Electrophoresis, Polyacrylamide Gel, Formate Dehydrogenases/genetics/*metabolism, Fructose/*metabolism, Hydrogen-Ion Concentration, Leuconostoc/enzymology/genetics, Mannitol/*metabolism, Mannitol Dehydrogenases/genetics/*metabolism, NAD/metabolismMetabolism
Genetics21705609Genome sequence of Leuconostoc pseudomesenteroides KCTC 3652.Kim DW, Choi SH, Kang A, Nam SH, Kim RN, Kim A, Kim DS, Park HSJ Bacteriol10.1128/JB.05433-112011*Genome, Bacterial, Leuconostoc/*genetics, Molecular Sequence Data
Biotechnology24432660[Production of D-mannitol by metabolically engineered Escherichia coli].Wang X, Chen J, Liu P, Xu H, Yu P, Zhang XSheng Wu Gong Cheng Xue Bao2013Escherichia coli/*genetics/*metabolism, Fermentation, Industrial Microbiology/methods, Leuconostoc/enzymology, Mannitol/*metabolism, Mannitol Dehydrogenases/genetics, Metabolic Engineering/*methods, Monosaccharide Transport Proteins/geneticsMetabolism
Metabolism28258980In situ synthesis of exopolysaccharides by Leuconostoc spp. and Weissella spp. and their rheological impacts in fava bean flour.Xu Y, Wang Y, Coda R, Sade E, Tuomainen P, Tenkanen M, Katina KInt J Food Microbiol10.1016/j.ijfoodmicro.2017.02.0122017Fermentation, Flour/*microbiology, Food Handling/*methods, Food Industry/methods, Leuconostoc/*metabolism, Mannitol/metabolism, Polysaccharides, Bacterial/chemistry, Rheology, Sucrose/metabolism, Vicia faba/*metabolism/microbiology, *Viscosity, Weissella/*metabolism
Metabolism29628253Interactions between fava bean protein and dextrans produced by Leuconostoc pseudomesenteroides DSM 20193 and Weissella cibaria Sj 1b.Xu Y, Pitkanen L, Maina NH, Coda R, Katina K, Tenkanen MCarbohydr Polym10.1016/j.carbpol.2018.02.0822018Dextrans/biosynthesis/*metabolism, Glycosylation, Hydrogen-Ion Concentration, Leuconostoc/*metabolism, Plant Proteins/*metabolism, Protein Binding, Rheology, Vicia faba/*chemistry, Viscosity, Weissella/*metabolism
Metabolism30599931Impact of in situ produced exopolysaccharides on rheology and texture of fava bean protein concentrate.Xu Y, Coda R, Holopainen-Mantila U, Laitila A, Katina K, Tenkanen MFood Res Int10.1016/j.foodres.2018.08.0542018Acetic Acid/metabolism, Dextrans/metabolism, Fabaceae/metabolism, *Fermentation, Hydrogen-Ion Concentration, Lactic Acid, Lactobacillales/metabolism, Leuconostoc/metabolism, Mannitol/metabolism, Polysaccharides/*metabolism, *Rheology, Sucrose/metabolism, Vicia faba/*metabolism, Weissella/metabolism
Phylogeny32228772Leuconostoc litchii sp. nov., a novel lactic acid bacterium isolated from lychee.Chen YS, Wang LT, Wu YC, Mori K, Tamura T, Chang CH, Chang YC, Wu HC, Yi HH, Wang PYInt J Syst Evol Microbiol10.1099/ijsem.0.0039382020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermentation, Fruit/*microbiology, Lactic Acid, Leuconostoc/*classification/isolation & purification, Leuconostoc mesenteroides, Litchi/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, TaiwanTranscriptome
Phylogeny33288171Isolation and characterization of indigenous Weissella confusa for in situ bacterial exopolysaccharides (EPS) production in chickpea sourdough.Galli V, Venturi M, Coda R, Maina NH, Granchi LFood Res Int10.1016/j.foodres.2020.1097852020Bread, *Cicer, Leuconostoc, *WeissellaBiotechnology
Phylogeny33295855Leuconostoc falkenbergense sp. nov., isolated from a lactic culture, fermentating string beans and traditional yogurt.Wu Y, Gu CTInt J Syst Evol Microbiol10.1099/ijsem.0.0046022020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermented Foods/*microbiology, *Food Microbiology, Genes, Bacterial, Leuconostoc/*classification/isolation & purification, Nucleic Acid Hybridization, Phaseolus/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sweden, Yogurt/*microbiologyBiotechnology
Metabolism33482833Brewers' spent grain as substrate for dextran biosynthesis by Leuconostoc pseudomesenteroides DSM20193 and Weissella confusa A16.Koirala P, Maina NH, Nihtila H, Katina K, Coda RMicrob Cell Fact10.1186/s12934-021-01515-42021Beer, Dextrans/*biosynthesis, Edible Grain/*metabolism, *Fermentation, Gene Expression Regulation, Enzymologic, Glucosyltransferases/genetics/metabolism, Hydrogen-Ion Concentration, Lactobacillales/genetics/metabolism, Leuconostoc/genetics/growth & development/*metabolism, Mannitol/metabolism, Oligosaccharides/metabolism, Polysaccharides/metabolism, Sucrose/metabolism, Viscosity, Weissella/genetics/growth & development/*metabolism
34199014Bioprocessing of Barley and Lentil Grains to Obtain In Situ Synthesis of Exopolysaccharides and Composite Wheat Bread with Improved Texture and Health Properties.Perri G, Rizzello CG, Ampollini M, Celano G, Coda R, Gobbetti M, De Angelis M, Calasso MFoods10.3390/foods100714892021

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8467Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20193)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20193
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34245Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15100
49882Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 30063)https://www.ccug.se/strain?id=30063
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
76298Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3524.1StrainInfo: A central database for resolving microbial strain identifiers
121993Curators of the CIPCollection of Institut Pasteur (CIP 103316)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103316