Strain identifier

BacDive ID: 6831

Type strain: No

Species: Leuconostoc pseudomesenteroides

Strain Designation: 798

Strain history: CIP <- 1989, NCIB, Leuconostoc pseudomesenteroides <- 1950, NCTC <- strain 798

NCBI tax ID(s): 33968 (species)

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General

@ref: 2265

BacDive-ID: 6831

DSM-Number: 5624

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, ovoid-shaped, human pathogen

description: Leuconostoc pseudomesenteroides 798 is a facultative anaerobe, mesophilic, Gram-positive human pathogen of the family Lactobacillaceae.

NCBI tax id

  • NCBI tax id: 33968
  • Matching level: species

strain history

@refhistory
2265<- NCDO <- NCIB 3740 <- NCTC 3740 <- ATCC (Leuconostoc dextranicum)
67770CIP 103325 <-- NCIB 3740 <-- NCTC 3740 <-- ATCC (Leuconostoc dextranicum).
120902CIP <- 1989, NCIB, Leuconostoc pseudomesenteroides <- 1950, NCTC <- strain 798

doi: 10.13145/bacdive6831.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Leuconostoc
  • species: Leuconostoc pseudomesenteroides
  • full scientific name: Leuconostoc pseudomesenteroides Farrow et al. 1989

@ref: 2265

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Leuconostocaceae

genus: Leuconostoc

species: Leuconostoc pseudomesenteroides

full scientific name: Leuconostoc pseudomesenteroides Farrow et al. 1989

strain designation: 798

type strain: no

Morphology

cell morphology

  • @ref: 120902
  • gram stain: positive
  • cell shape: ovoid-shaped
  • motility: no

colony morphology

  • @ref: 120902

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2265MRS MEDIUM (DSMZ Medium 11)yeshttps://mediadive.dsmz.de/medium/11Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
35529MEDIUM 40- for Lactobacillus and LeuconostocyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
120902CIP Medium 40yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40

culture temp

@refgrowthtypetemperaturerange
2265positivegrowth30mesophilic
35529positivegrowth30mesophilic
67770positivegrowth25mesophilic
120902positivegrowth10-37
120902nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 120902
  • oxygen tolerance: facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
120902NaClpositivegrowth0-8 %
120902NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate+builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose+builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose+builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371salicin+builds acid from17814
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside+builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
120902nitrate-reduction17632
120902nitrite-reduction16301
120902nitrate+respiration17632

antibiotic resistance

  • @ref: 120902
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12090215688acetoin-
12090217234glucose+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)-
68382alkaline phosphatase-3.1.3.1
120902oxidase-
120902alcohol dehydrogenase-1.1.1.1
120902gelatinase-
120902caseinase+3.4.21.50
120902catalase-1.11.1.6
120902lysine decarboxylase-4.1.1.18
120902ornithine decarboxylase-4.1.1.17

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120902-------+--++---++---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
120902---+++----+++-------+++/-+/-+/-++/-+-+++--+----+------+-+

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_41.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_22;96_35;97_36;98_39;99_41&stattab=map
  • Last taxonomy: Leuconostoc
  • 16S sequence: LC260035
  • Sequence Identity:
  • Total samples: 44756
  • soil counts: 3647
  • aquatic counts: 6333
  • animal counts: 32069
  • plant counts: 2707

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
2265yes, in single cases1Risk group (German classification)
1209021Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Leuconostoc mesenteroides subsp. mesenteroides gene for 16S ribosomal RNA, partial sequence, strain: JCM 11045
  • accession: LC260035
  • length: 1489
  • database: ena
  • NCBI tax ID: 33967

Genome sequences

  • @ref: 66792
  • description: Leuconostoc falkenbergense strain FDAARGOS_1201
  • accession: 2766470.4
  • assembly level: complete
  • database: patric
  • NCBI tax ID: 2766470

GC content

  • @ref: 2265
  • GC-content: 40.6

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno95.254no
gram-positiveyes97.062no
anaerobicno93.713no
halophileyes95.868no
spore-formingno94.92no
glucose-utilyes89.269no
flagellatedno97.994no
aerobicno95.198no
thermophileno99.734yes
glucose-fermentyes88.874no

External links

@ref: 2265

culture collection no.: DSM 5624, NCDO 1590, NCIB 3740, JCM 11045, CIP 103325, NCIMB 3740, NCTC 3740

straininfo link

  • @ref: 76296
  • straininfo: 47959

Reference

@idauthorscataloguedoi/urltitle
2265Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5624)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5624
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
35529Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15110
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76296Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID47959.1StrainInfo: A central database for resolving microbial strain identifiers
120902Curators of the CIPCollection of Institut Pasteur (CIP 103325)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103325