Strain identifier

BacDive ID: 6810

Type strain: Yes

Species: Oenococcus oeni

Strain Designation: Baudry 1

Strain history: CIP <- 1999, F. Gasser, Inst. Pasteur, Paris, France <- ATCC <- NCDO <- E. Peynaud

NCBI tax ID(s): 1122618 (strain), 1247 (species)

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General

@ref: 8662

BacDive-ID: 6810

DSM-Number: 20252

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive, oval-shaped

description: Oenococcus oeni Baudry 1 is a mesophilic, Gram-positive, oval-shaped bacterium that was isolated from wine.

NCBI tax id

NCBI tax idMatching level
1122618strain
1247species

strain history

@refhistory
8662<- NCDO <- E. Peynaud, Baudry 1
67770ATCC 23279 <-- NCDO 1674 <-- E. Peynaud (Baudry 1).
121401CIP <- 1999, F. Gasser, Inst. Pasteur, Paris, France <- ATCC <- NCDO <- E. Peynaud

doi: 10.13145/bacdive6810.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Oenococcus
  • species: Oenococcus oeni
  • full scientific name: Oenococcus oeni (Garvie 1967) Dicks et al. 1995

  • synonyms

    @refsynonym
    20215Leuconostoc oeni
    20215Leuconostoc oenos

@ref: 8662

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Leuconostocaceae

genus: Oenococcus

species: Oenococcus oeni

full scientific name: Oenococcus oeni (Garvie 1967) Dicks et al. 1995

strain designation: Baudry 1

type strain: yes

Morphology

cell morphology

  • @ref: 121401
  • gram stain: positive
  • cell shape: oval-shaped
  • motility: no

multimedia

@refmultimedia contentcaptionintellectual property rights
66793EM_DSM_20252_1.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_20252_2.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_20252_3.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_20252_4.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_20252_5.jpgelectron microscopic image© HZI/Manfred Rohde

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8662LEUCONOSTOC OENOS MEDIUM (DSMZ Medium 59)yeshttps://mediadive.dsmz.de/medium/59Name: LEUCONOSTOC OENOS MEDIUM (DSMZ Medium 59) Composition: Casein peptone 9.99001 g/l Glucose 9.99001 g/l Fructose 4.99501 g/l Yeast extract 4.99501 g/l (NH4) citrate 3.4965 g/l L-Cysteine HCl x H2O 0.499501 g/l MgSO4 x 7 H2O 0.1998 g/l MnSO4 x H2O 0.04995 g/l Tomato juice Tween 80 Distilled water
40293MEDIUM 292 - for Oenococcus oeniyesDistilled water make up to (1000.000 ml);ManganeseII chloride tetrahydrate(0.050 g);Magnesium sulphate heptahydrate (0.200 g);Agar (15.000 g);Glucose (10.000 g);Yeast extract (5.000 g);Peptone (10.000 g);Filtered tomato Juice (250.000 ml)
121401CIP Medium 292yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=292

culture temp

@refgrowthtypetemperaturerange
8662positivegrowth30mesophilic
40293positivegrowth22psychrophilic
67770positivegrowth30mesophilic
121401positivegrowth22-30
121401nogrowth10psychrophilic
121401nogrowth15psychrophilic
121401nogrowth37mesophilic
121401nogrowth45thermophilic

Physiology and metabolism

murein

  • @ref: 8662
  • murein short key: A11.18
  • type: A3alpha L-Lys-L-Ser-L-Ala

observation

  • @ref: 67770
  • observation: Assay of Tomato juice factor

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12140117632nitrate-builds gas from
12140117632nitrate-reduction
12140116301nitrite-builds gas from
12140116301nitrite-reduction

metabolite tests

  • @ref: 121401
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)-
68382alkaline phosphatase-3.1.3.1
121401oxidase-
121401alcohol dehydrogenase-1.1.1.1
121401catalase-1.11.1.6
121401lysine decarboxylase-4.1.1.18
121401ornithine decarboxylase-4.1.1.17

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121401-----++---++---++---

Isolation, sampling and environmental information

isolation

@refsample type
8662wine
67770Wine
121401Food, Wine

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Beverage
#Engineered#Food production#Fermented
#Host#Plants#Shrub (Scrub)
#Host Body-Site#Plant#Fruit (Seed)

taxonmaps

  • @ref: 69479
  • File name: preview.99_566.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16020;96_109;97_402;98_461;99_566&stattab=map
  • Last taxonomy: Oenococcus oeni subclade
  • 16S sequence: LC071842
  • Sequence Identity:
  • Total samples: 1993
  • soil counts: 380
  • aquatic counts: 173
  • animal counts: 1270
  • plant counts: 170

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
86621Risk group (German classification)
1214011Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Oenococcus oeni gene for 16S rRNA, strain:JCM 6125AB0229241471ena1247
20218Oenococcus oeni gene for 16S rRNA, partial sequence, strain: JCM 6125AB5969391486ena1247
20218Oenococcus oeni gene for 16S rRNA, partial sequence, strain: NBRC 100497AB6811951489ena1247
20218Leuconostoc oenos gene for 16S ribosomal RNA, partial sequenceD31673208ena1247
20218O.oeni 16S ribosomal RNAX959801335ena1247
20218L.oenos DNA for 16S-23S intergenic spacer regionX90455495ena1247
67770Oenococcus oeni gene for 16S ribosomal RNA, partial sequence, strain: JCM 6125LC0718421506ena1247
67770L.oenos 16S small subunit ribosomal RNAM358201510ena1247

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Oenococcus oeni DSM 20252 = AWRIB129GCA_000372485contigncbi1122618
66792Oenococcus oeni DSM 20252 = AWRIB129GCA_000309445contigncbi1122618
66792Oenococcus oeni DSM 20252 = AWRIB1291122618.5wgspatric1122618
66792Oenococcus oeni DSM 20252 = AWRIB1291122618.3wgspatric1122618
66792Oenococcus oeni DSM 202522515154139draftimg1122618

GC content

@refGC-contentmethod
866238.9
6777038.9thermal denaturation, midpoint method (Tm)
6777042thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno95.626no
flagellatedno98.223no
gram-positiveyes95.201no
anaerobicno71.451no
aerobicno96.489no
halophileyes79.02no
spore-formingno96.921no
glucose-utilyes91.579no
thermophileno97.818no
glucose-fermentyes85.788no

External links

@ref: 8662

culture collection no.: DSM 20252, ATCC 23279, NCDO 1674, JCM 6125, BCRC 14062, CCUG 30067, CCUG 30199, CCUG 32250, CECT 217, CIP 106144, KCTC 3072, LMG 9851, NBRC 100497, NCIMB 11648, NRIC 1543, NRRL B-3472, VTT E-97832

straininfo link

  • @ref: 76276
  • straininfo: 3504

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny7537074Proposal to reclassify Leuconostoc oenos as Oenococcus oeni [corrig.] gen. nov., comb. nov..Dicks LM, Dellaglio F, Collins MDInt J Syst Bacteriol10.1099/00207713-45-2-3951995DNA, Bacterial/genetics, Gram-Positive Cocci/chemistry/*classification/physiology, Leuconostoc/chemistry/*classification/physiology, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, Wine/microbiology
Metabolism16012836Performance assessment of malolactic fermenting bacteria Oenococcus oeni and Lactobacillus brevis in continuous culture.Zhang D, Lovitt RWAppl Microbiol Biotechnol10.1007/s00253-005-0021-y2005Biomass, Carbon Dioxide/metabolism, Culture Media/chemistry, Fermentation, Fructose/metabolism, Glucose/metabolism, Gram-Positive Bacteria/*growth & development/metabolism, Hydrogen-Ion Concentration, Lactic Acid/*metabolism, Lactobacillus brevis/*growth & development/metabolism, Malates/*metabolismCultivation
Metabolism16108798Studies on growth and metabolism of Oenococcus oeni on sugars and sugar mixtures.Zhang DS, Lovitt RWJ Appl Microbiol10.1111/j.1365-2672.2005.02628.x2005Acetates/analysis, Adenosine Triphosphate/metabolism, Biomass, Carbon Dioxide/analysis, Culture Media, Erythritol/analysis, Ethanol/analysis, Fermentation/physiology, Fructose/analysis/metabolism, Glucose/analysis/metabolism, Glycerol/analysis, Gram-Positive Cocci/*growth & development/metabolism, Hydrogen-Ion Concentration, Lactates/analysis, Mannitol/analysis, Sucrose/analysis/metabolism, Sweetening Agents/analysis/*metabolismCultivation
Metabolism18501594Oenococcus oeni cells immobilized on delignified cellulosic material for malolactic fermentation of wine.Agouridis N, Kopsahelis N, Plessas S, Koutinas AA, Kanellaki MBioresour Technol10.1016/j.biortech.2008.04.0262008Acetaldehyde/analysis, Alcohols/analysis, Carbohydrates/analysis, Cells, Immobilized/metabolism, Cellulose/*metabolism, Diacetyl/analysis, Ethanol/analysis, *Fermentation, Gas Chromatography-Mass Spectrometry, Glycerol/analysis, Lactic Acid/*metabolism, Leuconostoc/*cytology, Lignin/*metabolism, Malates/*metabolism, Methanol/analysis, Volatilization, *Wine

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8662Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20252)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20252
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40293Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18242
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life 35: 676-683 201728604660
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76276Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3504.1StrainInfo: A central database for resolving microbial strain identifiers
121401Curators of the CIPCollection of Institut Pasteur (CIP 106144)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106144