Strain identifier
BacDive ID: 6809
Type strain:
Species: Turneriella parva
Strain Designation: H
Strain history: <- R. Galloway, CDC; strain H {2008} <- W. A. Ellis
NCBI tax ID(s): 869212 (strain), 29510 (species)
General
@ref: 15763
BacDive-ID: 6809
DSM-Number: 21527
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Turneriella parva H is a mesophilic bacterium that was isolated from contaminated liquid culture medium.
NCBI tax id
NCBI tax id | Matching level |
---|---|
29510 | species |
869212 | strain |
strain history
- @ref: 15763
- history: <- R. Galloway, CDC; strain H {2008} <- W. A. Ellis
doi: 10.13145/bacdive6809.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/spirochaetota
- domain: Bacteria
- phylum: Spirochaetota
- class: Spirochaetia
- order: Leptospirales
- family: Leptospiraceae
- genus: Turneriella
- species: Turneriella parva
- full scientific name: Turneriella parva (Hovind-Hougen et al. 1982) Levett et al. 2005
synonyms
@ref synonym 20215 Turneria parva 20215 Leptospira parva
@ref: 15763
domain: Bacteria
phylum: Spirochaetes
class: Spirochaetia
order: Spirochaetales
family: Leptospiraceae
genus: Turneriella
species: Turneriella parva
full scientific name: Turneriella parva (Hovind-Hougen et al. 1982) Levett et al. 2005
strain designation: H
type strain: yes
Morphology
multimedia
- @ref: 66793
- multimedia content: EM_DSM_21527_1.jpg
- caption: electron microscopic image
- intellectual property rights: © HZI/Manfred Rohde
Culture and growth conditions
culture medium
- @ref: 15763
- name: LEPTOSPIRA-MEDIUM (DSMZ Medium 1113)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1113
- composition: Name: LEPTOSPIRA-MEDIUM (DSMZ Medium 1113) Composition: Leptospira Medium Base EMJH 2.3 g/l Agarose 1.5 g/l Leptospira Enrichment EMJH Distilled water
culture temp
- @ref: 15763
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 15763
- sample type: contaminated liquid culture medium
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Contamination | |
#Engineered | #Laboratory | #Lab enrichment |
taxonmaps
- @ref: 69479
- File name: preview.99_5460.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16083;96_2646;97_3244;98_4078;99_5460&stattab=map
- Last taxonomy: Turneriella parva subclade
- 16S sequence: AY293856
- Sequence Identity:
- Total samples: 13044
- soil counts: 3715
- aquatic counts: 7757
- animal counts: 702
- plant counts: 870
Safety information
risk assessment
- @ref: 15763
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 15763
- description: Turneriella parva serovar Parva strain H 16S ribosomal RNA gene, partial sequence
- accession: AY293856
- length: 1440
- database: ena
- NCBI tax ID: 869212
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Turneriella parva DSM 21527 | GCA_000266885 | complete | ncbi | 869212 |
66792 | Turneriella parva DSM 21527 | 869212.3 | complete | patric | 869212 |
66792 | Turneriella parva DSM 21527 | 869212.10 | plasmid | patric | 869212 |
66792 | Turneriella parva H, DSM 21527 | 2506520013 | complete | img | 869212 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 86.776 | no |
flagellated | no | 60.892 | no |
gram-positive | no | 97.851 | no |
anaerobic | no | 93.881 | no |
aerobic | yes | 69.71 | no |
halophile | no | 93.836 | no |
spore-forming | no | 91.575 | no |
thermophile | no | 98.393 | no |
glucose-util | yes | 56.785 | no |
glucose-ferment | no | 88.59 | no |
External links
@ref: 15763
culture collection no.: DSM 21527, ATCC BAA 1111, NCTC 11395
straininfo link
- @ref: 76275
- straininfo: 100727
literature
- topic: Phylogeny
- Pubmed-ID: 16014471
- title: Reclassification of Leptospira parva Hovind-Hougen et al. 1982 as Turneriella parva gen. nov., comb. nov.
- authors: Levett PN, Morey RE, Galloway R, Steigerwalt AG, Ellis WA
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.63088-0
- year: 2005
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Leptospira/*classification/genetics, Leptospiraceae/*classification/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S, Sequence Analysis, DNA
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
15763 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21527) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21527 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
76275 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID100727.1 | StrainInfo: A central database for resolving microbial strain identifiers |