Strain identifier

BacDive ID: 6809

Type strain: Yes

Species: Turneriella parva

Strain Designation: H

Strain history: <- R. Galloway, CDC; strain H {2008} <- W. A. Ellis

NCBI tax ID(s): 869212 (strain), 29510 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 15763

BacDive-ID: 6809

DSM-Number: 21527

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Turneriella parva H is a mesophilic bacterium that was isolated from contaminated liquid culture medium.

NCBI tax id

NCBI tax idMatching level
29510species
869212strain

strain history

  • @ref: 15763
  • history: <- R. Galloway, CDC; strain H {2008} <- W. A. Ellis

doi: 10.13145/bacdive6809.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/spirochaetota
  • domain: Bacteria
  • phylum: Spirochaetota
  • class: Spirochaetia
  • order: Leptospirales
  • family: Leptospiraceae
  • genus: Turneriella
  • species: Turneriella parva
  • full scientific name: Turneriella parva (Hovind-Hougen et al. 1982) Levett et al. 2005
  • synonyms

    @refsynonym
    20215Turneria parva
    20215Leptospira parva

@ref: 15763

domain: Bacteria

phylum: Spirochaetes

class: Spirochaetia

order: Spirochaetales

family: Leptospiraceae

genus: Turneriella

species: Turneriella parva

full scientific name: Turneriella parva (Hovind-Hougen et al. 1982) Levett et al. 2005

strain designation: H

type strain: yes

Morphology

multimedia

  • @ref: 66793
  • multimedia content: EM_DSM_21527_1.jpg
  • caption: electron microscopic image
  • intellectual property rights: © HZI/Manfred Rohde

Culture and growth conditions

culture medium

  • @ref: 15763
  • name: LEPTOSPIRA-MEDIUM (DSMZ Medium 1113)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1113
  • composition: Name: LEPTOSPIRA-MEDIUM (DSMZ Medium 1113) Composition: Leptospira Medium Base EMJH 2.3 g/l Agarose 1.5 g/l Leptospira Enrichment EMJH Distilled water

culture temp

  • @ref: 15763
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 15763
  • sample type: contaminated liquid culture medium

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination
#Engineered#Laboratory#Lab enrichment

taxonmaps

  • @ref: 69479
  • File name: preview.99_5460.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16083;96_2646;97_3244;98_4078;99_5460&stattab=map
  • Last taxonomy: Turneriella parva subclade
  • 16S sequence: AY293856
  • Sequence Identity:
  • Total samples: 13044
  • soil counts: 3715
  • aquatic counts: 7757
  • animal counts: 702
  • plant counts: 870

Safety information

risk assessment

  • @ref: 15763
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15763
  • description: Turneriella parva serovar Parva strain H 16S ribosomal RNA gene, partial sequence
  • accession: AY293856
  • length: 1440
  • database: ena
  • NCBI tax ID: 869212

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Turneriella parva DSM 21527GCA_000266885completencbi869212
66792Turneriella parva DSM 21527869212.3completepatric869212
66792Turneriella parva DSM 21527869212.10plasmidpatric869212
66792Turneriella parva H, DSM 215272506520013completeimg869212

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes86.776no
flagellatedno60.892no
gram-positiveno97.851no
anaerobicno93.881no
aerobicyes69.71no
halophileno93.836no
spore-formingno91.575no
thermophileno98.393no
glucose-utilyes56.785no
glucose-fermentno88.59no

External links

@ref: 15763

culture collection no.: DSM 21527, ATCC BAA 1111, NCTC 11395

straininfo link

  • @ref: 76275
  • straininfo: 100727

literature

  • topic: Phylogeny
  • Pubmed-ID: 16014471
  • title: Reclassification of Leptospira parva Hovind-Hougen et al. 1982 as Turneriella parva gen. nov., comb. nov.
  • authors: Levett PN, Morey RE, Galloway R, Steigerwalt AG, Ellis WA
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.63088-0
  • year: 2005
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Leptospira/*classification/genetics, Leptospiraceae/*classification/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15763Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21527)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21527
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life 35: 676-683 201728604660
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76275Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID100727.1StrainInfo: A central database for resolving microbial strain identifiers