Strain identifier
BacDive ID: 6807
Type strain: 
Species: Leptospira terpstrae
Strain Designation: Hualin, LT 11-33
Strain history: <- R. Galloway, CDC; LT 11-33 {2008} <- ...
NCBI tax ID(s): 293075 (species)
version 8.1 (current version)
General
@ref: 15758
BacDive-ID: 6807
DSM-Number: 21521
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, spiral-shaped
description: Leptospira terpstrae Hualin is an aerobe, mesophilic, Gram-negative bacterium of the family Leptospiraceae.
NCBI tax id
- NCBI tax id: 293075
- Matching level: species
strain history
- @ref: 15758
- history: <- R. Galloway, CDC; LT 11-33 {2008} <- ...
doi: 10.13145/bacdive6807.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/spirochaetota
- domain: Bacteria
- phylum: Spirochaetota
- class: Spirochaetia
- order: Leptospirales
- family: Leptospiraceae
- genus: Leptospira
- species: Leptospira terpstrae
- full scientific name: Leptospira terpstrae Smythe et al. 2013
@ref: 15758
domain: Bacteria
phylum: Spirochaetes
class: Spirochaetia
order: Spirochaetales
family: Leptospiraceae
genus: Leptospira
species: Leptospira terpstrae
full scientific name: Leptospira terpstrae Smythe et al. 2013
strain designation: Hualin, LT 11-33
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell shape | motility | confidence |
|---|---|---|---|---|
| 30912 | negative | spiral-shaped | yes | |
| 69480 | negative | 99.989 |
Culture and growth conditions
culture medium
- @ref: 15758
- name: LEPTOSPIRA-MEDIUM (DSMZ Medium 1113)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1113
- composition: Name: LEPTOSPIRA-MEDIUM (DSMZ Medium 1113) Composition: Leptospira Medium Base EMJH 2.3 g/l Agarose 1.5 g/l Leptospira Enrichment EMJH Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 15758 | positive | growth | 30 | mesophilic |
| 30912 | positive | growth | 12-36 |
Physiology and metabolism
oxygen tolerance
- @ref: 30912
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.998 |
Isolation, sampling and environmental information
isolation
- @ref: 15758
- country: China
- origin.country: CHN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_3187.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15829;96_1660;97_1987;98_2443;99_3187&stattab=map
- Last taxonomy: Leptospira
- 16S sequence: AY631888
- Sequence Identity:
- Total samples: 4961
- soil counts: 824
- aquatic counts: 3560
- animal counts: 382
- plant counts: 195
Safety information
risk assessment
- @ref: 15758
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 15758
- description: Leptospira genomosp. 4 serovar Hualin strain LT 11-33 16S ribosomal RNA gene, partial sequence
- accession: AY631888
- length: 1422
- database: ena
- NCBI tax ID: 293076
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Leptospira terpstrae serovar Hualin str. LT 11-33 = ATCC 700639 | GCA_000332495 | contig | ncbi | 1257025 |
| 66792 | Leptospira terpstrae serovar Hualin str. LT 11-33 = ATCC 700639 | 1257025.3 | wgs | patric | 1257025 |
GC content
| @ref | GC-content |
|---|---|
| 15758 | 38.9 |
| 30912 | 38 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 91.681 | yes |
| gram-positive | no | 98.659 | yes |
| anaerobic | no | 97.145 | yes |
| aerobic | yes | 78.248 | yes |
| halophile | no | 94.193 | no |
| spore-forming | no | 93.976 | no |
| thermophile | no | 97.108 | yes |
| glucose-util | yes | 54.092 | no |
| flagellated | no | 70.68 | no |
| glucose-ferment | no | 90.642 | no |
External links
@ref: 15758
culture collection no.: DSM 21521, ATCC 700639
literature
- topic: Phylogeny
- Pubmed-ID: 22984140
- title: Classification of Leptospira genomospecies 1, 3, 4 and 5 as Leptospira alstonii sp. nov., Leptospira vanthielii sp. nov., Leptospira terpstrae sp. nov. and Leptospira yanagawae sp. nov., respectively.
- authors: Smythe L, Adler B, Hartskeerl RA, Galloway RL, Turenne CY, Levett PN, The International Committee On Systematics Of Prokaryotes Subcommittee On The Taxonomy Of
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.047324-0
- year: 2012
- mesh: *Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Leptospira/*classification/genetics, Molecular Sequence Data, RNA, Ribosomal, 16S/genetics
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 15758 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21521) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21521 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 30912 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 27242 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 |