Strain identifier

BacDive ID: 6804

Type strain: Yes

Species: Leptospira fainei

Strain Designation: LEP 1209

Strain history: CIP <- 2002, D. Postic, Inst. Pasteur, Paris, France <- Rod Chappel, Australia: strain BUT 6

NCBI tax ID(s): 48782 (species)

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General

@ref: 16266

BacDive-ID: 6804

DSM-Number: 22303

keywords: 16S sequence, Bacteria, mesophilic

description: Leptospira fainei LEP 1209 is a mesophilic bacterium that was isolated from genito-urinary tracts of pigs .

NCBI tax id

  • NCBI tax id: 48782
  • Matching level: species

strain history

@refhistory
16266<- R. Galloway, CDC <- ? <- R. J. Chappel
119272CIP <- 2002, D. Postic, Inst. Pasteur, Paris, France <- Rod Chappel, Australia: strain BUT 6

doi: 10.13145/bacdive6804.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/spirochaetota
  • domain: Bacteria
  • phylum: Spirochaetota
  • class: Spirochaetia
  • order: Leptospirales
  • family: Leptospiraceae
  • genus: Leptospira
  • species: Leptospira fainei
  • full scientific name: Leptospira fainei Perolat et al. 1998

@ref: 16266

domain: Bacteria

phylum: Spirochaetes

class: Spirochaetia

order: Spirochaetales

family: Leptospiraceae

genus: Leptospira

species: Leptospira fainei

full scientific name: Leptospira fainei Perolat et al. 1998

strain designation: LEP 1209

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16266LEPTOSPIRA-MEDIUM (DSMZ Medium 1113)yeshttps://mediadive.dsmz.de/medium/1113Name: LEPTOSPIRA-MEDIUM (DSMZ Medium 1113) Composition: Leptospira Medium Base EMJH 2.3 g/l Agarose 1.5 g/l Leptospira Enrichment EMJH Distilled water
119272CIP Medium 189yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=189

culture temp

@refgrowthtypetemperaturerange
16266positivegrowth30mesophilic
119272positivegrowth29mesophilic

Physiology and metabolism

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119272-------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
16266genito-urinary tracts of pigs (uterus of a sow)New South WalesAustraliaAUSAustralia and Oceania
119272Animal, PigAustraliaAUSAustralia and Oceania

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Suidae (Pig,Swine)
#Host Body-Site#Urogenital tract

taxonmaps

  • @ref: 69479
  • File name: preview.99_2020.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_26;96_1119;97_1314;98_1583;99_2020&stattab=map
  • Last taxonomy: Leptospira
  • 16S sequence: U60594
  • Sequence Identity:
  • Total samples: 3007
  • soil counts: 169
  • aquatic counts: 1106
  • animal counts: 1640
  • plant counts: 92

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
162662Risk group (German classification)
1192722Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
16266Leptospira fainei 16S ribosomal RNA gene, partial sequenceU605941481ena48782
16266Leptospira fainei serovar Hurstbridge strain BUT 6 16S ribosomal RNA gene, partial sequenceAY6318851431ena1193011

External links

@ref: 16266

culture collection no.: DSM 22303, ATCC BAA 1109, But 6, CRBIP6.1209

straininfo link

  • @ref: 76272
  • straininfo: 300835

Reference

@idauthorscataloguedoi/urltitle
16266Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22303)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22303
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76272Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID300835.1StrainInfo: A central database for resolving microbial strain identifiers
119272Curators of the CIPCollection of Institut Pasteur (CRBIP6.1209)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CRBIP6.1209