Strain identifier

BacDive ID: 6800

Type strain: Yes

Species: Leptospira noguchii

Strain Designation: CZ 214, LEP1178

Strain history: CIP <- 2002, D. Postic, Inst. Pasteur, Paris, France: strain CZ 214

NCBI tax ID(s): 28182 (species)

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General

@ref: 15757

BacDive-ID: 6800

DSM-Number: 21520

keywords: 16S sequence, Bacteria, mesophilic

description: Leptospira noguchii CZ 214 is a mesophilic bacterium that was isolated from opossum kidney, Didelphis marsupialis.

NCBI tax id

  • NCBI tax id: 28182
  • Matching level: species

strain history

@refhistory
15757<- R. Galloway, CDC; CZ 214 {2008} <- N. B. Gale
121326CIP <- 2002, D. Postic, Inst. Pasteur, Paris, France: strain CZ 214

doi: 10.13145/bacdive6800.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/spirochaetota
  • domain: Bacteria
  • phylum: Spirochaetota
  • class: Spirochaetia
  • order: Leptospirales
  • family: Leptospiraceae
  • genus: Leptospira
  • species: Leptospira noguchii
  • full scientific name: Leptospira noguchii Yasuda et al. 1987

@ref: 15757

domain: Bacteria

phylum: Spirochaetes

class: Spirochaetia

order: Spirochaetales

family: Leptospiraceae

genus: Leptospira

species: Leptospira noguchii

full scientific name: Leptospira noguchii Yasuda et al. 1987

strain designation: CZ 214, LEP1178

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15757LEPTOSPIRA-MEDIUM (DSMZ Medium 1113)yeshttps://mediadive.dsmz.de/medium/1113Name: LEPTOSPIRA-MEDIUM (DSMZ Medium 1113) Composition: Leptospira Medium Base EMJH 2.3 g/l Agarose 1.5 g/l Leptospira Enrichment EMJH Distilled water
121326CIP Medium 189yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=189

culture temp

@refgrowthtypetemperaturerange
15757positivegrowth30mesophilic
121326positivegrowth29mesophilic

Physiology and metabolism

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
121326-------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typehost speciescountryorigin.countrycontinentisolation date
15757opossum kidney, Didelphis marsupialisDidelphis marsupialisPanamaPANMiddle and South America
121326Animal, OpossumPanamaPANNorth America1962

isolation source categories

Cat1Cat2Cat3
#Host#Mammals
#Host Body-Site#Urogenital tract#Kidney

taxonmaps

  • @ref: 69479
  • File name: preview.99_53.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_26;96_43;97_45;98_49;99_53&stattab=map
  • Last taxonomy: Leptospira
  • 16S sequence: AY631886
  • Sequence Identity:
  • Total samples: 572
  • soil counts: 127
  • aquatic counts: 210
  • animal counts: 210
  • plant counts: 25

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
157572Risk group (German classification)
1213262Risk group (French classification)

Sequence information

16S sequences

  • @ref: 15757
  • description: Leptospira noguchii serovar Panama strain CZ 214 16S ribosomal RNA gene, partial sequence
  • accession: AY631886
  • length: 1431
  • database: ena
  • NCBI tax ID: 293073

GC content

  • @ref: 15757
  • GC-content: 36.5
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 15757

culture collection no.: DSM 21520, ATCC 43288, CRBIP6.1178

straininfo link

  • @ref: 76268
  • straininfo: 45125

Reference

@idauthorscataloguedoi/urltitle
15757Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21520)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21520
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76268Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID45125.1StrainInfo: A central database for resolving microbial strain identifiers
121326Curators of the CIPCollection of Institut Pasteur (CRBIP6.1178)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CRBIP6.1178