Strain identifier

BacDive ID: 68

Type strain: Yes

Species: Roseomonas ludipueritiae

Strain Designation: 170/96

Strain history: CIP <- 2002, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 170/96 <- 1998, M.A. Anderson

NCBI tax ID(s): 198093 (species)

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General

@ref: 5459

BacDive-ID: 68

DSM-Number: 14915

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative

description: Roseomonas ludipueritiae 170/96 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from wall of a childrens care center.

NCBI tax id

  • NCBI tax id: 198093
  • Matching level: species

strain history

@refhistory
5459<- P. Kämpfer; 170/96 <- M. A. Andersson
120663CIP <- 2002, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 170/96 <- 1998, M.A. Anderson

doi: 10.13145/bacdive68.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Roseomonas
  • species: Roseomonas ludipueritiae
  • full scientific name: Roseomonas ludipueritiae (Kämpfer et al. 2003) Sánchez-Porro et al. 2009

  • synonyms

    @refsynonym
    20215Pseudoroseomonas ludipueritiae
    20215Teichococcus ludipueritiae

@ref: 5459

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Teichococcus

species: Teichococcus ludipueritiae

full scientific name: Teichococcus ludipueritiae Kämpfer et al. 2003

strain designation: 170/96

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.989
120663negativeoval-shapedno

colony morphology

@refincubation periodhemolysis ability
607002 days
1206631

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5459TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
33790MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
120663CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
5459positivegrowth28mesophilic
33790positivegrowth30mesophilic
60700positivegrowth30mesophilic
120663positivegrowth15-41
120663nogrowth10psychrophilic
120663nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
60700aerobe
120663obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.99

halophily

@refsaltgrowthtested relationconcentration
120663NaClpositivegrowth0 %
120663NaClnogrowth2 %
120663NaClnogrowth4 %
120663NaClnogrowth6 %
120663NaClnogrowth8 %
120663NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12066316947citrate-carbon source
1206634853esculin-hydrolysis
120663606565hippurate+hydrolysis
12066317632nitrate-reduction
12066316301nitrite-reduction
12066317632nitrate-respiration

antibiotic resistance

  • @ref: 120663
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 120663
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12066315688acetoin-
12066317234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase+3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
120663oxidase+
120663beta-galactosidase+3.2.1.23
120663alcohol dehydrogenase-1.1.1.1
120663gelatinase-
120663amylase+
120663DNase+
120663caseinase-3.4.21.50
120663catalase+1.11.1.6
120663tween esterase+
120663gamma-glutamyltransferase+2.3.2.2
120663lecithinase-
120663lipase-
120663lysine decarboxylase-4.1.1.18
120663ornithine decarboxylase-4.1.1.17
120663phenylalanine ammonia-lyase-4.3.1.24
120663tryptophan deaminase-
120663urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120663-+++-+-----+--+-----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
120663--------------------------------------------------------------+--+--------------------+------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling dateisolation date
5459wall of a childrens care centerFinlandFINEurope
60700Wall of a children care centerFinlandFINEurope1998
120663Wall of a children care centreFinlandFINEurope1998

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Built environment
  • Cat3: #House

taxonmaps

  • @ref: 69479
  • File name: preview.99_83846.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_266;96_1135;97_44263;98_57881;99_83846&stattab=map
  • Last taxonomy: Roseomonas ludipueritiae subclade
  • 16S sequence: AJ488504
  • Sequence Identity:
  • Total samples: 997
  • soil counts: 285
  • aquatic counts: 97
  • animal counts: 321
  • plant counts: 294

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
54591Risk group (German classification)
1206631Risk group (French classification)

Sequence information

16S sequences

  • @ref: 5459
  • description: Teichococcus ludipueritiae partial 16S rRNA gene
  • accession: AJ488504
  • length: 1486
  • database: ena
  • NCBI tax ID: 198093

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudoroseomonas ludipueritiae DSM 14915GCA_014490445scaffoldncbi198093
66792Roseomonas ludipueritiae strain DSM 14915198093.3wgspatric198093

GC content

  • @ref: 5459
  • GC-content: 65.8

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno87.462no
gram-positiveno97.283no
anaerobicno97.676no
aerobicyes93.329no
halophileno93.5no
spore-formingno93.166no
thermophileno98.087no
glucose-utilyes83.061no
motileyes76.915no
glucose-fermentno90.221no

External links

@ref: 5459

culture collection no.: DSM 14915, CIP 107418, CCUG 55703

straininfo link

  • @ref: 69752
  • straininfo: 113557

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12747406Teichococcus ludipueritiae gen. nov. sp. nov., and Muricoccus roseus gen. nov. sp. nov. representing two new genera of the alpha-1 subclass of the Proteobacteria.Kampfer P, Andersson MA, Jackel U, Salkinoja-Salonen MSyst Appl Microbiol10.1078/0723202033223372722003Alphaproteobacteria/*classification/genetics/isolation & purification/ultrastructure, Base Composition, Base Sequence, Culture Media/chemistry, Fatty Acids/analysis, Molecular Sequence Data, Phylogeny, Pigments, Biological/analysis, Quinones/analysis, RNA, Ribosomal, 16S/analysisGenetics
Phylogeny19406818Transfer of Teichococcus ludipueritiae and Muricoccus roseus to the genus Roseomonas, as Roseomonas ludipueritiae comb. nov. and Roseomonas rosea comb. nov., respectively, and emended description of the genus Roseomonas.Sanchez-Porro C, Gallego V, Busse HJ, Kampfer P, Ventosa AInt J Syst Evol Microbiol10.1099/ijs.0.004820-02009Bacterial Typing Techniques, DNA, Bacterial/analysis/genetics, Fatty Acids/analysis, Genes, rRNA, Methylobacteriaceae/*classification/genetics/physiology, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species SpecificityPhenotype
Phylogeny19857940Roseomonas aestuarii sp. nov., a bacteriochlorophyll-a containing alphaproteobacterium isolated from an estuarine habitat of India.Venkata Ramana V, Sasikala Ch, Takaichi S, Ramana ChVSyst Appl Microbiol10.1016/j.syapm.2009.09.0042009Bacteriochlorophyll A/*analysis, Base Composition, Carotenoids/analysis, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, India, Locomotion, Methylobacteriaceae/chemistry/*classification/*isolation & purification/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Organic Chemicals/metabolism, Phylogeny, Pigments, Biological/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Water MicrobiologyMetabolism
Phylogeny23178724Roseomonas aerophila sp. nov., isolated from air.Kim SJ, Weon HY, Ahn JH, Hong SB, Seok SJ, Whang KS, Kwon SWInt J Syst Evol Microbiol10.1099/ijs.0.046482-02012*Air Microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Methylobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Ubiquinone/analysisGenetics
Phylogeny28820105Roseomonas hibiscisoli sp. nov., isolated from the rhizosphere of Mugunghwa (Hibiscus syriacus).Yan ZF, Lin P, Li CT, Kook M, Wang QJ, Yi THInt J Syst Evol Microbiol10.1099/ijsem.0.0020362017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hibiscus/*microbiology, Methylobacteriaceae/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistryTranscriptome
Phylogeny31145678Roseomonas wenyumeiae sp. nov., isolated from faeces of Tibetan antelopes (Pantholops hodgsonii) on the Qinghai-Tibet Plateau.Tian Z, Lu S, Jin D, Yang J, Pu J, Lai XH, Wang XX, Wu XM, Li J, Wang S, Xu JInt J Syst Evol Microbiol10.1099/ijsem.0.0034792019Animals, Antelopes/*microbiology, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/microbiology, Methylobacteriaceae/*classification/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistryTranscriptome
Phylogeny34826100Isolation and characterization of tick-borne Roseomonas haemaphysalidis sp. nov. and rodent-borne Roseomonas marmotae sp. nov.Zhu W, Zhou J, Lu S, Yang J, Lai XH, Jin D, Pu J, Huang Y, Liu L, Li Z, Xu JJ Microbiol10.1007/s12275-022-1428-12021Animals, Bacterial Typing Techniques, Base Composition, Cardiolipins/analysis, DNA, Bacterial, Marmota/*microbiology, Methylobacteriaceae/*cytology/genetics/*isolation & purification, Phosphatidylethanolamines/analysis, Phylogeny, RNA, Ribosomal, 16S, Sequence Analysis, DNA, Ticks/*microbiologyTranscriptome

Reference

@idauthorscataloguedoi/urltitle
5459Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14915)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14915
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
33790Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4852
60700Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 55703)https://www.ccug.se/strain?id=55703
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
69752Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID113557.1StrainInfo: A central database for resolving microbial strain identifiers
120663Curators of the CIPCollection of Institut Pasteur (CIP 107418)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107418