Strain identifier

BacDive ID: 6799

Type strain: Yes

Species: Leptospira meyeri

Strain Designation: Rananum, LEP1223, ICF

Strain history: CIP <- 2002, D. Postic, Inst. Pasteur, Paris, France <- Kaufman, CDC, Atlanta, USA: strain ICF

NCBI tax ID(s): 29508 (species)

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General

@ref: 15773

BacDive-ID: 6799

DSM-Number: 21537

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Leptospira meyeri Rananum is a mesophilic bacterium that was isolated from kidneys of a leopard frog .

NCBI tax id

  • NCBI tax id: 29508
  • Matching level: species

strain history

@refhistory
15773<- R. Galloway, CDC; Iowa City Frog {2008} <- S.L. Diesch
120933CIP <- 2002, D. Postic, Inst. Pasteur, Paris, France <- Kaufman, CDC, Atlanta, USA: strain ICF

doi: 10.13145/bacdive6799.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/spirochaetota
  • domain: Bacteria
  • phylum: Spirochaetota
  • class: Spirochaetia
  • order: Leptospirales
  • family: Leptospiraceae
  • genus: Leptospira
  • species: Leptospira meyeri
  • full scientific name: Leptospira meyeri Yasuda et al. 1987

@ref: 15773

domain: Bacteria

phylum: Spirochaetes

class: Spirochaetia

order: Spirochaetales

family: Leptospiraceae

genus: Leptospira

species: Leptospira meyeri

full scientific name: Leptospira meyeri Yasuda et al. 1987

strain designation: Rananum, LEP1223, ICF

type strain: yes

Morphology

colony morphology

  • @ref: 15773
  • incubation period: 8-14 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15773LEPTOSPIRA-MEDIUM (DSMZ Medium 1113)yeshttps://mediadive.dsmz.de/medium/1113Name: LEPTOSPIRA-MEDIUM (DSMZ Medium 1113) Composition: Leptospira Medium Base EMJH 2.3 g/l Agarose 1.5 g/l Leptospira Enrichment EMJH Distilled water
120933CIP Medium 189yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=189

culture temp

@refgrowthtypetemperaturerange
15773positivegrowth30mesophilic
120933positivegrowth29mesophilic

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentisolation date
15773kidneys of a leopard frog ( Rana pipiens)Rana pipiensIowaUSAUSANorth America
120933Animal, Leopard frogUnited States of AmericaUSANorth America1964

isolation source categories

Cat1Cat2Cat3
#Host#Amphibia
#Host Body-Site#Urogenital tract#Kidney

taxonmaps

  • @ref: 69479
  • File name: preview.99_3187.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15829;96_1660;97_1987;98_2443;99_3187&stattab=map
  • Last taxonomy: Leptospira
  • 16S sequence: AY631878
  • Sequence Identity:
  • Total samples: 4961
  • soil counts: 824
  • aquatic counts: 3560
  • animal counts: 382
  • plant counts: 195

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
157731Risk group (German classification)
1209331Risk group (French classification)

Sequence information

16S sequences

  • @ref: 15773
  • description: Leptospira meyeri serovar Ranarum strain Iowa City Frog 16S ribosomal RNA gene, partial sequence
  • accession: AY631878
  • length: 1422
  • database: ena
  • NCBI tax ID: 293064

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Leptospira meyeri DSM 21537GCA_004368965contigncbi29508
66792Leptospira meyeri strain DSM 2153729508.7wgspatric29508
66792Leptospira meyeri DSM 215372731957520draftimg29508

GC content

  • @ref: 15773
  • GC-content: 33.5
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno97.895no
anaerobicno96.806no
halophileno92.385no
spore-formingno92.755no
glucose-utilyes62.789no
motileyes87.869no
flagellatedno71.754no
thermophileno98.069no
aerobicyes76.882no
glucose-fermentno90.083no

External links

@ref: 15773

culture collection no.: DSM 21537, ATCC 43287, Iowa City Frog, CRBIP6.1223

straininfo link

  • @ref: 76267
  • straininfo: 41757

Reference

@idauthorscataloguedoi/urltitle
15773Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21537)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21537
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76267Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID41757.1StrainInfo: A central database for resolving microbial strain identifiers
120933Curators of the CIPCollection of Institut Pasteur (CRBIP6.1223)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CRBIP6.1223