Strain identifier
BacDive ID: 6797
Type strain: 
Species: Leptospira inadai
Strain Designation: 10
Strain history: <- R. Galloway, CDC <- G. P. Schmid
NCBI tax ID(s): 29506 (species)
version 8.1 (current version)
General
@ref: 16267
BacDive-ID: 6797
DSM-Number: 22304
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Leptospira inadai 10 is a mesophilic bacterium that was isolated from human skin.
NCBI tax id
- NCBI tax id: 29506
- Matching level: species
strain history
- @ref: 16267
- history: <- R. Galloway, CDC <- G. P. Schmid
doi: 10.13145/bacdive6797.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/spirochaetota
- domain: Bacteria
- phylum: Spirochaetota
- class: Spirochaetia
- order: Leptospirales
- family: Leptospiraceae
- genus: Leptospira
- species: Leptospira inadai
- full scientific name: Leptospira inadai Yasuda et al. 1987
@ref: 16267
domain: Bacteria
phylum: Spirochaetes
class: Spirochaetia
order: Spirochaetales
family: Leptospiraceae
genus: Leptospira
species: Leptospira inadai
full scientific name: Leptospira inadai Yasuda et al. 1987
strain designation: 10
type strain: yes
Culture and growth conditions
culture medium
- @ref: 16267
- name: LEPTOSPIRA-MEDIUM (DSMZ Medium 1113)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1113
- composition: Name: LEPTOSPIRA-MEDIUM (DSMZ Medium 1113) Composition: Leptospira Medium Base EMJH 2.3 g/l Agarose 1.5 g/l Leptospira Enrichment EMJH Distilled water
culture temp
- @ref: 16267
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 16267
- sample type: human skin
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body-Site | #Organ | #Skin, Nail, Hair |
taxonmaps
- @ref: 69479
- File name: preview.99_2020.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_26;96_1119;97_1314;98_1583;99_2020&stattab=map
- Last taxonomy: Leptospira
- 16S sequence: AY631896
- Sequence Identity:
- Total samples: 3007
- soil counts: 169
- aquatic counts: 1106
- animal counts: 1640
- plant counts: 92
Safety information
risk assessment
- @ref: 16267
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16267
- description: Leptospira inadai serovar Lyme strain 10 16S ribosomal RNA gene, partial sequence
- accession: AY631896
- length: 1431
- database: ena
- NCBI tax ID: 293084
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Leptospira inadai serovar Lyme str. 10 | GCA_000243675 | contig | ncbi | 1049790 |
| 66792 | Leptospira inadai serovar Lyme str. 10 | 1049790.3 | wgs | patric | 1049790 |
GC content
- @ref: 16267
- GC-content: 42.6
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 86.537 | no |
| flagellated | no | 72.836 | no |
| gram-positive | no | 97.896 | no |
| anaerobic | no | 96.808 | no |
| aerobic | yes | 76.96 | no |
| halophile | no | 94.347 | no |
| spore-forming | no | 91.499 | no |
| thermophile | no | 94.165 | yes |
| glucose-util | yes | 61.459 | no |
| glucose-ferment | no | 88.203 | no |
External links
@ref: 16267
culture collection no.: DSM 22304, ATCC 43289
straininfo link
- @ref: 76265
- straininfo: 41758
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16267 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22304) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22304 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 76265 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID41758.1 | StrainInfo: A central database for resolving microbial strain identifiers |