Strain identifier

BacDive ID: 6758

Type strain: Yes

Species: Legionella adelaidensis

Strain Designation: 1762-Aus-E

Strain history: CIP <- 1993, R.F. Benson, CDC, Atlanta, Georgia, USA: strain 1762-AUS-E <- J.A. Lanser, Inst. Med. Vet. Sci., Adelaide, Australia

NCBI tax ID(s): 45056 (species)

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General

@ref: 8369

BacDive-ID: 6758

DSM-Number: 19888

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped, human pathogen

description: Legionella adelaidensis 1762-Aus-E is a mesophilic, Gram-negative, motile human pathogen that was isolated from cooling tower water.

NCBI tax id

  • NCBI tax id: 45056
  • Matching level: species

strain history

@refhistory
8369<- CCUG <- R. F. Benson, CDC; 1762-Aus-E <- J. A. Lanser
116038CIP <- 1993, R.F. Benson, CDC, Atlanta, Georgia, USA: strain 1762-AUS-E <- J.A. Lanser, Inst. Med. Vet. Sci., Adelaide, Australia

doi: 10.13145/bacdive6758.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Legionellales
  • family: Legionellaceae
  • genus: Legionella
  • species: Legionella adelaidensis
  • full scientific name: Legionella adelaidensis Benson et al. 1991

@ref: 8369

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Legionellales

family: Legionellaceae

genus: Legionella

species: Legionella adelaidensis

full scientific name: Legionella adelaidensis Benson et al. 1991

strain designation: 1762-Aus-E

type strain: yes

Morphology

cell morphology

  • @ref: 116038
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 8369
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8369BCYE-AGAR (DSMZ Medium 585)yeshttps://mediadive.dsmz.de/medium/585Name: BCYE AGAR (DSMZ Medium 585) Composition: OXOID Legionella CYE-Agar base
34407MEDIUM 23 - for Afipia and LegionellayesDistilled water make up to (1000.000 ml);Legionella agar (37.000 g);Legionella - enrichment mixture (10.000 ml)
116038CIP Medium 23yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=23

culture temp

@refgrowthtypetemperaturerange
8369positivegrowth37mesophilic
34407positivegrowth37mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11603817632nitrate-reduction
11603816301nitrite-reduction

metabolite production

  • @ref: 116038
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
8369catalase+1.11.1.6
8369cytochrome-c oxidase-1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
116038oxidase-
116038catalase+1.11.1.6
116038urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116038--++-++---++--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
8369cooling tower waterAdelaideAustraliaAUSAustralia and Oceania
50486Water,cooling towerAustraliaAUSAustralia and Oceania
116038Environment, WaterAdelaideAustraliaAUSAustralia and Oceania

isolation source categories

Cat1Cat2Cat3
#Engineered#Industrial#Cooling tower
#Environmental#Aquatic#Freshwater

taxonmaps

  • @ref: 69479
  • File name: preview.99_4700.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_35;96_2333;97_2836;98_3524;99_4700&stattab=map
  • Last taxonomy: Legionella adelaidensis subclade
  • 16S sequence: Z49716
  • Sequence Identity:
  • Total samples: 758
  • soil counts: 215
  • aquatic counts: 378
  • animal counts: 139
  • plant counts: 26

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
8369yes, in single cases1Risk group (German classification)
1160382Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Legionella adelaidensis strain MDC1596 16S ribosomal RNA gene, partial sequenceJF720364524ena45056
8369L.adelaidensis gene for ribosomal RNA, small subunitZ497161420ena45056

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Legionella adelaidensis NCTC12735GCA_900637865completencbi45056
66792Legionella adelaidensis 1762-AUS-EGCA_900639835scaffoldncbi45056
66792Legionella adelaidensis 1762-AUS-EGCA_001467055scaffoldncbi45056
66792Legionella adelaidensis strain 1762-AUS-E45056.6wgspatric45056
66792Legionella adelaidensis strain NCTC1273545056.9completepatric45056
66792Legionella adelaidensis 1762-AUS-E2695420683draftimg45056

GC content

  • @ref: 8369
  • GC-content: 40

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno97.486no
gram-positiveno98.839no
anaerobicno97.799no
aerobicno87.768no
halophileno74.672no
spore-formingno94.658no
thermophileno96.89yes
glucose-utilyes59.742no
motileno82.883no
glucose-fermentno88.303no

External links

@ref: 8369

culture collection no.: DSM 19888, ATCC 49625, CCUG 31231, CIP 103645, NCTC 12735, CCUG 31231 A

straininfo link

  • @ref: 76228
  • straininfo: 46886

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8369Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19888)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19888
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34407Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15465
50486Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 31231 A)https://www.ccug.se/strain?id=31231
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76228Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID46886.1StrainInfo: A central database for resolving microbial strain identifiers
116038Curators of the CIPCollection of Institut Pasteur (CIP 103645)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103645