Strain identifier

BacDive ID: 6757

Type strain: Yes

Species: Legionella quinlivanii

Strain Designation: 1442-Aus-E

Strain history: CIP <- 1999, ATCC <- R.F. Benson, CDC: strain 1442-AUS-E <- R.P Walters

NCBI tax ID(s): 1122167 (strain), 45073 (species)

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General

@ref: 15582

BacDive-ID: 6757

DSM-Number: 21216

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, human pathogen

description: Legionella quinlivanii 1442-Aus-E is a microaerophile, mesophilic, Gram-negative human pathogen that was isolated from Water in bus air conditioner, Adelaide, Australia.

NCBI tax id

NCBI tax idMatching level
1122167strain
45073species

strain history

@refhistory
15582<- CIP <- ATCC <- R. F. Benson, CDC <- R. P. Walters; 1442-Aus-E
122112CIP <- 1999, ATCC <- R.F. Benson, CDC: strain 1442-AUS-E <- R.P Walters

doi: 10.13145/bacdive6757.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Legionellales
  • family: Legionellaceae
  • genus: Legionella
  • species: Legionella quinlivanii
  • full scientific name: Legionella quinlivanii Benson et al. 1990

@ref: 15582

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Legionellales

family: Legionellaceae

genus: Legionella

species: Legionella quinlivanii

full scientific name: Legionella quinlivanii Benson et al. 1990

strain designation: 1442-Aus-E

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.996
122112negativerod-shapedno

multimedia

@refmultimedia contentcaptionintellectual property rights
66793EM_DSM_21216_1.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_21216_2.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_21216_3.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_21216_4.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_21216_5.jpgelectron microscopic image© HZI/Manfred Rohde

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15582BCYE-AGAR (DSMZ Medium 585)yeshttps://mediadive.dsmz.de/medium/585Name: BCYE AGAR (DSMZ Medium 585) Composition: OXOID Legionella CYE-Agar base
39247MEDIUM 23 - for Afipia and LegionellayesDistilled water make up to (1000.000 ml);Legionella agar (37.000 g);Legionella - enrichment mixture (10.000 ml)
122112CIP Medium 23yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=23

culture temp

@refgrowthtypetemperaturerange
15582positivegrowth37mesophilic
39247positivegrowth37mesophilic
50489positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
15582microaerophile
50489microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.992

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)-
68382alkaline phosphatase+3.1.3.1

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    50489C14:00.814
    50489C15:02.715
    50489C16:09.316
    50489C17:02.417
    50489C20:00.420
    50489C13:0 ISO 2OH0.613.814
    50489C14:0 ISO1.913.618
    50489C14:1 ω5c0.613.899
    50489C15:0 ANTEISO21.214.711
    50489C15:0 ISO0.814.621
    50489C15:1 ω6c5.914.856
    50489C16:0 iso1615.626
    50489C16:1 ω7c26.515.819
    50489C17:0 anteiso10.116.722
    50489C17:0 iso116.629
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122112-+-+-+++--++--------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
15582Water in bus air conditioner, Adelaide, AustraliaAustraliaAUSAustralia and Oceania
50489Water,bus air conditionerAustraliaAUSAustralia and Oceania
122112Environment, Water in bus air conditionerAustraliaAUSAustralia and OceaniaAdelaide

isolation source categories

Cat1Cat2Cat3
#Engineered#Built environment#Air conditioner
#Environmental#Aquatic

taxonmaps

  • @ref: 69479
  • File name: preview.99_8299.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_35;96_767;97_3891;98_6039;99_8299&stattab=map
  • Last taxonomy: Legionella quinlivanii subclade
  • 16S sequence: Z49733
  • Sequence Identity:
  • Total samples: 1675
  • soil counts: 543
  • aquatic counts: 796
  • animal counts: 147
  • plant counts: 189

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
15582yes, in single cases1Risk group (German classification)
1221122Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Legionella quinlivanii strain MDC1614 16S ribosomal RNA gene, partial sequenceJF720360524ena45073
15582L.quinlivanii gene for ribosomal RNA, small subunitZ497331442ena45073

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Legionella quinlivanii NCTC12433GCA_900461555contigncbi45073
66792Legionella quinlivanii 1442-AUS-EGCA_900639995scaffoldncbi45073
66792Legionella quinlivanii DSM 21216GCA_900108145scaffoldncbi1122167
66792Legionella quinlivanii DSM 212161122167.4wgspatric1122167
66792Legionella quinlivanii strain CDC#1442-AUS-E45073.5wgspatric45073
66792Legionella quinlivanii strain NCTC1243345073.7wgspatric45073
66792Legionella quinlivanii DSM 212162599185259draftimg1122167

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
glucose-fermentno88.227no
motileyes87.265no
flagellatedno74.48no
gram-positiveno98.007no
anaerobicno98.343no
aerobicno83.844no
halophileno87.202no
spore-formingno93.419no
thermophileno98.559yes
glucose-utilyes72.594no

External links

@ref: 15582

culture collection no.: DSM 21216, ATCC 43830, CCUG 31234 A, CIP 105272, NCTC 12433

straininfo link

  • @ref: 76227
  • straininfo: 42074

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15582Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21216)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21216
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39247Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17273
50489Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 31234 A)https://www.ccug.se/strain?id=31234
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life 35: 676-683 201728604660
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
76227Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID42074.1StrainInfo: A central database for resolving microbial strain identifiers
122112Curators of the CIPCollection of Institut Pasteur (CIP 105272)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105272