Strain identifier

BacDive ID: 6754

Type strain: Yes

Species: Legionella santicrucis

Strain Designation: SC-63-C7

Strain history: <- CCUG <- NCTC <- ATCC <- G. W. Gorman

NCBI tax ID(s): 45074 (species)

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General

@ref: 16692

BacDive-ID: 6754

DSM-Number: 23075

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, human pathogen

description: Legionella santicrucis SC-63-C7 is a microaerophile, mesophilic, Gram-negative human pathogen that was isolated from tap water.

NCBI tax id

  • NCBI tax id: 45074
  • Matching level: species

strain history

  • @ref: 16692
  • history: <- CCUG <- NCTC <- ATCC <- G. W. Gorman

doi: 10.13145/bacdive6754.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Legionellales
  • family: Legionellaceae
  • genus: Legionella
  • species: Legionella santicrucis
  • full scientific name: Legionella santicrucis Brenner et al. 1985

@ref: 16692

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Legionellales

family: Legionellaceae

genus: Legionella

species: Legionella santicrucis

full scientific name: Legionella santicrucis Brenner et al. 1985

strain designation: SC-63-C7

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.999

Culture and growth conditions

culture medium

  • @ref: 16692
  • name: BCYE-AGAR (DSMZ Medium 585)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/585
  • composition: Name: BCYE AGAR (DSMZ Medium 585) Composition: OXOID Legionella CYE-Agar base

culture temp

  • @ref: 16692
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 16692
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.972

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837717306maltose-builds acid from
6837717992sucrose-builds acid from
6837718257ornithine-degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
16692catalase+1.11.1.6
16692cytochrome-c oxidase+1.9.3.1
68377tryptophan deaminase-4.1.99.1
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase-3.1.3.1
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    49709C14:00.914
    49709C15:01.715
    49709C16:06.916
    49709C17:00.717
    49709C14:0 ISO10.913.618
    49709C14:1 ω5c0.813.899
    49709C15:0 ANTEISO10.414.711
    49709C15:1 ω6c4.414.856
    49709C16:0 iso2315.626
    49709C16:1 ω7c32.715.819
    49709C17:0 anteiso1.916.722
    49709C17:0 CYCLO5.316.888
    49709Unidentified0.513.442
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
16692+/-+/---------+/---
16692-+/-+/---------+/--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
16692tap waterSt. CroixVirgin Islands (U.S.)VIRMiddle and South America
49709Tap water

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Freshwater
#Engineered#Built environment#Water reservoir (Aquarium/pool)
#Engineered#Built environment

taxonmaps

  • @ref: 69479
  • File name: preview.99_5784.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_35;96_70;97_584;98_671;99_5784&stattab=map
  • Last taxonomy: Legionella
  • 16S sequence: HF558374
  • Sequence Identity:
  • Total samples: 1414
  • soil counts: 142
  • aquatic counts: 1090
  • animal counts: 151
  • plant counts: 31

Safety information

risk assessment

  • @ref: 16692
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Legionella santicrucis partial 16S rRNA gene, strain SC-63-C7HF5583741499ena45074
20218Legionella santicrucis strain MDC1615 16S ribosomal RNA gene, partial sequenceJF720401524ena45074
16692L.santicrucis gene for ribosomal RNA, small subunitZ497351414ena45074

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Legionella santicrucis SC-63-C7GCA_001468135scaffoldncbi45074
66792Legionella santicrucis SC-63-C7GCA_900639975scaffoldncbi45074
66792Legionella santicrucis strain SC-63-C745074.5wgspatric45074
66792Legionella santicrucis SC-63-C72663763173draftimg45074

GC content

  • @ref: 16692
  • GC-content: 38.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno94.094no
gram-positiveno97.987no
anaerobicno99.094yes
aerobicno83.486yes
halophileno86.099no
spore-formingno93.527no
glucose-utilyes64.811no
motileno68.169no
thermophileno99.415yes
glucose-fermentno90.141no

External links

@ref: 16692

culture collection no.: DSM 23075, ATCC 35301, CCUG 29673, CIP 103849, JCM 7557, NCTC 11989

straininfo link

  • @ref: 76224
  • straininfo: 105416

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16692Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23075)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23075
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
49709Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 29673)https://www.ccug.se/strain?id=29673
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68377Automatically annotated from API NH
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
76224Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID105416.1StrainInfo: A central database for resolving microbial strain identifiers