Strain identifier
BacDive ID: 6741
Type strain:
Species: Legionella jordanis
Strain Designation: BL-540
Strain history: CIP <- 1997, CDC <- G.W. Gorman: strain BL-540
NCBI tax ID(s): 456 (species)
General
@ref: 7970
BacDive-ID: 6741
DSM-Number: 19212
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, rod-shaped
description: Legionella jordanis BL-540 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from river water.
NCBI tax id
- NCBI tax id: 456
- Matching level: species
strain history
@ref | history |
---|---|
7970 | <- H. E. Müller <- ATCC <- G. W. Gorman; BL-540 |
120363 | CIP <- 1997, CDC <- G.W. Gorman: strain BL-540 |
doi: 10.13145/bacdive6741.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Legionellales
- family: Legionellaceae
- genus: Legionella
- species: Legionella jordanis
- full scientific name: Legionella jordanis Cherry et al. 1982
@ref: 7970
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Legionellales
family: Legionellaceae
genus: Legionella
species: Legionella jordanis
full scientific name: Legionella jordanis Cherry et al. 1982
strain designation: BL-540
type strain: yes
Morphology
cell morphology
- @ref: 120363
- gram stain: negative
- cell shape: rod-shaped
- motility: no
colony morphology
- @ref: 7970
- incubation period: 2-3 days
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
7970 | BCYE-AGAR (DSMZ Medium 585) | yes | https://mediadive.dsmz.de/medium/585 | Name: BCYE AGAR (DSMZ Medium 585) Composition: OXOID Legionella CYE-Agar base |
39246 | MEDIUM 23 - for Afipia and Legionella | yes | Distilled water make up to (1000.000 ml);Legionella agar (37.000 g);Legionella - enrichment mixture (10.000 ml) | |
120363 | CIP Medium 23 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=23 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
7970 | positive | growth | 37 | mesophilic |
39246 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
7970 | microaerophile |
120363 | facultative anaerobe |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
120363 | 17632 | nitrate | - | reduction |
120363 | 16301 | nitrite | - | reduction |
metabolite production
- @ref: 120363
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
7970 | catalase | + | 1.11.1.6 |
7970 | cytochrome-c oxidase | - | 1.9.3.1 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | valine arylamidase | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
120363 | oxidase | - | |
120363 | catalase | + | 1.11.1.6 |
120363 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
120363 | - | + | + | + | - | + | + | + | - | - | + | + | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
7970 | river water | Jordan River | USA | USA | North America |
46477 | Jordan river | ||||
120363 | Jordan River | Bloomington, Indiana | United States of America | USA | North America |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #River (Creek)
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
7970 | 2 | Risk group (German classification) |
120363 | 2 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Legionella jordanis strain MDC1583 16S ribosomal RNA gene, partial sequence | JF720361 | 525 | ena | 456 |
7970 | L.jordanis (ATCC 33623) gene for 16S rRNA | X73396 | 1469 | ena | 456 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Legionella jordanis BL-540 | GCA_001467765 | scaffold | ncbi | 456 |
66792 | Legionella jordanis ATCC 33623 | GCA_001648675 | scaffold | ncbi | 456 |
66792 | Legionella jordanis strain ATCC 33623 | 456.7 | wgs | patric | 456 |
66792 | Legionella jordanis strain BL-540 | 456.5 | wgs | patric | 456 |
66792 | Legionella jordanis BL-540 | 2657245025 | draft | img | 456 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 82.097 | no |
gram-positive | no | 98.588 | no |
anaerobic | no | 96.862 | no |
aerobic | no | 93.205 | yes |
halophile | no | 86.741 | no |
spore-forming | no | 92.747 | no |
glucose-util | yes | 64.333 | no |
motile | yes | 82.708 | no |
thermophile | no | 96.675 | yes |
glucose-ferment | no | 84.369 | no |
External links
@ref: 7970
culture collection no.: DSM 19212, ATCC 33623, CCUG 16413, CIP 105268
straininfo link
- @ref: 76211
- straininfo: 40588
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Pathogenicity | 7040449 | Legionella jordanis: a new species of Legionella isolated from water and sewage. | Cherry WB, Gorman GW, Orrison LH, Moss CW, Steigerwalt AG, Wilkinson HW, Johnson SE, McKinney RM, Brenner DJ | J Clin Microbiol | 10.1128/jcm.15.2.290-297.1982 | 1982 | DNA, Bacterial/analysis, Fatty Acids/analysis, Fluorescent Antibody Technique, Humans, Legionella/analysis/immunology/*isolation & purification, Legionnaires' Disease/immunology, Phenotype, *Sewage, *Water Microbiology | Phenotype |
Pathogenicity | 11529563 | Morphological variety of intracellular microcolonies of Legionella species in Vero cells. | Ogawa M, Takade A, Miyamoto H, Taniguchi H, Yoshida S | Microbiol Immunol | 10.1111/j.1348-0421.2001.tb02658.x | 2001 | Animals, Chlorocebus aethiops, Humans, Legionella/*classification/pathogenicity/physiology/*ultrastructure, Microscopy, Electron, Vero Cells | Phylogeny |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
7970 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19212) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19212 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
39246 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/17269 | ||||
46477 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 16413) | https://www.ccug.se/strain?id=16413 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
68382 | Automatically annotated from API zym | |||||
76211 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID40588.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
120363 | Curators of the CIP | Collection of Institut Pasteur (CIP 105268) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105268 |