Strain identifier

BacDive ID: 6741

Type strain: Yes

Species: Legionella jordanis

Strain Designation: BL-540

Strain history: CIP <- 1997, CDC <- G.W. Gorman: strain BL-540

NCBI tax ID(s): 456 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 7970

BacDive-ID: 6741

DSM-Number: 19212

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, rod-shaped

description: Legionella jordanis BL-540 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from river water.

NCBI tax id

  • NCBI tax id: 456
  • Matching level: species

strain history

@refhistory
7970<- H. E. Müller <- ATCC <- G. W. Gorman; BL-540
120363CIP <- 1997, CDC <- G.W. Gorman: strain BL-540

doi: 10.13145/bacdive6741.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Legionellales
  • family: Legionellaceae
  • genus: Legionella
  • species: Legionella jordanis
  • full scientific name: Legionella jordanis Cherry et al. 1982

@ref: 7970

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Legionellales

family: Legionellaceae

genus: Legionella

species: Legionella jordanis

full scientific name: Legionella jordanis Cherry et al. 1982

strain designation: BL-540

type strain: yes

Morphology

cell morphology

  • @ref: 120363
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 7970
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7970BCYE-AGAR (DSMZ Medium 585)yeshttps://mediadive.dsmz.de/medium/585Name: BCYE AGAR (DSMZ Medium 585) Composition: OXOID Legionella CYE-Agar base
39246MEDIUM 23 - for Afipia and LegionellayesDistilled water make up to (1000.000 ml);Legionella agar (37.000 g);Legionella - enrichment mixture (10.000 ml)
120363CIP Medium 23yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=23

culture temp

@refgrowthtypetemperaturerange
7970positivegrowth37mesophilic
39246positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
7970microaerophile
120363facultative anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12036317632nitrate-reduction
12036316301nitrite-reduction

metabolite production

  • @ref: 120363
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
7970catalase+1.11.1.6
7970cytochrome-c oxidase-1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
120363oxidase-
120363catalase+1.11.1.6
120363urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120363-+++-+++--++--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
7970river waterJordan RiverUSAUSANorth America
46477Jordan river
120363Jordan RiverBloomington, IndianaUnited States of AmericaUSANorth America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #River (Creek)

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
79702Risk group (German classification)
1203632Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Legionella jordanis strain MDC1583 16S ribosomal RNA gene, partial sequenceJF720361525ena456
7970L.jordanis (ATCC 33623) gene for 16S rRNAX733961469ena456

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Legionella jordanis BL-540GCA_001467765scaffoldncbi456
66792Legionella jordanis ATCC 33623GCA_001648675scaffoldncbi456
66792Legionella jordanis strain ATCC 33623456.7wgspatric456
66792Legionella jordanis strain BL-540456.5wgspatric456
66792Legionella jordanis BL-5402657245025draftimg456

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno82.097no
gram-positiveno98.588no
anaerobicno96.862no
aerobicno93.205yes
halophileno86.741no
spore-formingno92.747no
glucose-utilyes64.333no
motileyes82.708no
thermophileno96.675yes
glucose-fermentno84.369no

External links

@ref: 7970

culture collection no.: DSM 19212, ATCC 33623, CCUG 16413, CIP 105268

straininfo link

  • @ref: 76211
  • straininfo: 40588

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Pathogenicity7040449Legionella jordanis: a new species of Legionella isolated from water and sewage.Cherry WB, Gorman GW, Orrison LH, Moss CW, Steigerwalt AG, Wilkinson HW, Johnson SE, McKinney RM, Brenner DJJ Clin Microbiol10.1128/jcm.15.2.290-297.19821982DNA, Bacterial/analysis, Fatty Acids/analysis, Fluorescent Antibody Technique, Humans, Legionella/analysis/immunology/*isolation & purification, Legionnaires' Disease/immunology, Phenotype, *Sewage, *Water MicrobiologyPhenotype
Pathogenicity11529563Morphological variety of intracellular microcolonies of Legionella species in Vero cells.Ogawa M, Takade A, Miyamoto H, Taniguchi H, Yoshida SMicrobiol Immunol10.1111/j.1348-0421.2001.tb02658.x2001Animals, Chlorocebus aethiops, Humans, Legionella/*classification/pathogenicity/physiology/*ultrastructure, Microscopy, Electron, Vero CellsPhylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7970Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19212)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19212
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39246Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17269
46477Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 16413)https://www.ccug.se/strain?id=16413
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68382Automatically annotated from API zym
76211Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID40588.1StrainInfo: A central database for resolving microbial strain identifiers
120363Curators of the CIPCollection of Institut Pasteur (CIP 105268)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105268